PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G119500.1
Common NamePOPTR_0007s02830g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 113aa    MW: 12706.5 Da    PI: 7.5163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G119500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-1236963289
                        --SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                  B3 32 esktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.se 89
                        + + l  +d++gr+We+kl y+++ gr    v+++GW ++v+++gL ++D+++++++ + ++
  Potri.007G119500.1 36 NAISLAARDPTGRVWEFKL-YTRTHGRynkPVFGGGWLKYVREKGLTVNDSIILTMVADaEN 96
                        4567999************.65555555669************************8876454 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-10595IPR015300DNA-binding pseudobarrel domain
CDDcd100173.21E-12891No hitNo description
SuperFamilySSF1019367.46E-12895IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-93796IPR003340B3 DNA binding domain
PROSITE profilePS508638.71340108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MEIELVNKKL TTTDIESRLS YPTGNLWPFQ MVQGENAISL AARDPTGRVW EFKLYTRTHG  60
RYNKPVFGGG WLKYVREKGL TVNDSIILTM VADAENGVSY NIRVEPNTEL AI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G119500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.15e-72PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9PEP33e-77B9PEP3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02830.14e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313