PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G107800.4
Common NamePOPTR_0007s03970g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 861aa    MW: 95660.7 Da    PI: 8.6878
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G107800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-06165184525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         lC++f + G C++G+ C+F H
  Potri.007G107800.4 165 LCKDFVA-GRCRRGSHCPFLH 184
                         9******.************* PP

2zf-CCCH18.14.8e-06226244625
                         -SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                         C+ f++ G C++G++C++aH
  Potri.007G107800.4 226 CNEFLK-GSCRRGESCRYAH 244
                         9*****.************* PP

3zf-CCCH19.32e-06289309526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ffa+ G C+ G  C+F+H 
  Potri.007G107800.4 289 PCKFFAA-GNCRNGKYCRFSHN 309
                         7**9999.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.6E-5160186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943160187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5162185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5164185IPR000571Zinc finger, CCCH-type
SMARTSM003560.043220246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873284311IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5287309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MKEGGATSVR MSGSGRKRSS KWDLKEGPRM SFEDVEDNTW PGKAGISFRD KESRRDWLPP  60
EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRSRTLKATY EDESYGTRMS PGLDEWRQKS  120
FRNSPKNEYK RTRRSQSRSR SRSRSPVHGF GHERTRSISS VSAQLCKDFV AGRCRRGSHC  180
PFLHQDTQTC EDDWERRPRK ASASKYPISH DSKQYPMGSG RSADCCNEFL KGSCRRGESC  240
RYAHHGASDP SSRGSANDGI RERDNDRRHR YASPERRAER ETRRAADIPC KFFAAGNCRN  300
GKYCRFSHND QTPSPDKRSR DGRWPPSQNS DDVEKSWNDP KWSESHTSDA AKLSENKNEK  360
LDAPELRLSV RCMEDGWGHN LVENKTHNNP PTNEVVEIDK KEALPLKTEN AGDNSNVSEQ  420
RAPENWLGDM EMSPDWNYRL QPSNHINKGE HASLSSCELQ DGSGRARDTA AIMPPISNET  480
SSIQQGYNLK EIGGSALPHD DGVTGKTAGS YIDISTNALA TQSFNKNGLS SIASPIPNLN  540
AVGHIQEAIL TNPPRGGTMT APQNQTLVQD RKMINIPDIG NVNAPLVNLG IPMAQNMASN  600
EHLTQLTSLS VSLAQFLANG QQLPQLYAAR NSHNDTFANS EGTVKPDSMV TIQPRKQYDP  660
ICDSVEPGKH HVNTNPPDQK LELLSKNLSP SSLSAGLIGG DFNKFHSEQE FIDKSSQLNQ  720
PGPGVSSEVN KENNGVGSEE SNKVQEQDKG AQENGPLENS DGDGKADESK KNKDAKGSRA  780
FKFALVEFVK DLLKPAWKEG QMSKDAYKNI VKKVVDKVTG TMQSASIPTT QEKIEQYLLV  840
SKPKLTKLVQ AYVEKFQKDK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G107800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134930.0AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310510.20.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLB9HEQ30.0B9HEQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03970.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-18C3H family protein