PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G093400.1
Common NamePOPTR_0007s05410g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 1092aa    MW: 122445 Da    PI: 5.547
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G093400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.25e-56201362118
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ ++rwl++ ei++iL+n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n+
  Potri.007G093400.1  20 LEAQHRWLRPAEICEILTNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNE 110
                         5679*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+ywlLeeel++ivlvhy+evk
  Potri.007G093400.1 111 NFQRRSYWLLEEELSHIVLVHYREVK 136
                         ***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.94815141IPR005559CG-1 DNA-binding domain
SMARTSM010768.2E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038595.6E-4921134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.1E-4511599IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.03E-15513598IPR014756Immunoglobulin E-set
PfamPF018332.1E-5513596IPR002909IPT domain
SuperFamilySSF484034.66E-15688804IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-16688805IPR020683Ankyrin repeat-containing domain
CDDcd002046.72E-11699802No hitNo description
PROSITE profilePS5029716.547710814IPR020683Ankyrin repeat-containing domain
PfamPF000235.4E-4743774IPR002110Ankyrin repeat
SMARTSM002480.011743772IPR002110Ankyrin repeat
PROSITE profilePS500889.778743775IPR002110Ankyrin repeat
SMARTSM002483300782811IPR002110Ankyrin repeat
SuperFamilySSF525405.84E-8913967IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152916938IPR000048IQ motif, EF-hand binding site
PfamPF006120.0045919937IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206919946IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0039939961IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597940964IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-4942961IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MADTKRYPLG NQLDIQQILL EAQHRWLRPA EICEILTNYQ RFRIAPEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWLL  120
EEELSHIVLV HYREVKQGTR TNFNRIKEHE ECIPYSQETE DTMPSSEMDT SVSSRFHPNG  180
YQVPTRTTDT TSMNSAQASE YEDAESVYNN QASSTFHSFL EVQKPAMERI DTGSSVHYDH  240
MTFSSDYQGK LSAVPGMDVI SLAQVDKTKE TNGTESACEP QKVIDLPSWE DVLENYARGT  300
ESVPFQTLLS QDDTVGIIPK QEDGILEKLL TNSFDKREDI GSHILDQEAW QSMEGVSSHL  360
LKWSVDQKLL LNSGYDLTAR FPDQQLDSGN LINTLEPLCT QENDLHIQND IQIQPANADH  420
GMTLEGKSMY SSSVKHHILD GSGTEGLKKL DSFTRWMSKE LGDVEPQVQS SSGSYWITAE  480
SENGVDDSSN PSQGNLDAYL LSPSLSQDQL FSIIDFSPNW AYAGTEIKVL IMGRFLKGRE  540
AAENCQWSIM FGEVEVPAEV IADGVLRCNT PSHKAGRIPF YVTCSNRVAC SEVREFEYLS  600
HTQDITYYYS DSVTEDLNMR FGKLLSLSSV SPSKYDSSSV DEILSSKINS LLNEDNETWD  660
QMFKLTSEEG FSSEKVKEQL VQKLLKEQLH VWLLQKASEG GKGPSVLDEG GQGVLHFAAA  720
LGYDWALEPT IVAGVSVNFR DVNGWTALHW AASYGRERTV ASLIHLGAAP GALTDPTPKY  780
PTSRTPADLA SANGHKGISG FLAESALSAH LSSLNLEKQD GKAAECSGTQ ASQTVSGCNA  840
TPVNDADLPS RLPLKDSLAA VCNATQAAAR IHQVFRVQSF QKKQLKEYGD DKLGMSHERA  900
LSLIAVKSQK AGQYDEPVHA AIRIQNKFRG WKGRKEFLII RQRIVKIQAH VRGHQVRKNY  960
RKIIWSVGIL DKIILRWRRK GSGLRGFKSE ALTDGSSMQV VQSKDDDDDF LKEGRRQTEE  1020
RSQIALARVK SMHQHPEARE QYCRLRNVVA EIQEAKAMGE WANNSEVMAE FDDLVDLGTL  1080
MDDDSFMPSN S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G093400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461051.10.0calmodulin-binding transcription activator 3 isoform X1
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLB9HFG20.0B9HFG2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]