PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G076800.1
Common NamePOPTR_0007s07090g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 323aa    MW: 34945.5 Da    PI: 7.2373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G076800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-21124173255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp    ++ +r++lg+f+t+e Aa+a+++a+++++g
  Potri.007G076800.1 124 KYRGVRQRP-WGKWAAEIRDP----IKaARVWLGTFDTPEAAARAYDEAALRFRG 173
                         8********.**********7....357************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-33123182IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-23124182IPR016177DNA-binding domain
SMARTSM003806.0E-39124187IPR001471AP2/ERF domain
PfamPF008477.9E-15124173IPR001471AP2/ERF domain
CDDcd000181.38E-24124183No hitNo description
PROSITE profilePS5103225.607124181IPR001471AP2/ERF domain
PRINTSPR003672.1E-11125136IPR001471AP2/ERF domain
PRINTSPR003672.1E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MLPDSSRERE MSIMVTALTR VVAGNVPADD SDSSTAFSNN QGDCIHGGLS AKREREEEGG  60
CSEENERLCR AFGDGFLHGD DSSAGRATGI SVVTTSTVTP ASTQMTFTPV YEHNETRRDE  120
PQRKYRGVRQ RPWGKWAAEI RDPIKAARVW LGTFDTPEAA ARAYDEAALR FRGSKAKLNF  180
PENVKLRPSP PPSPTANQLT VSDSPSSGLL SLSTSSELLL HSQALHHTQN REISREQVSQ  240
PQLILGVGGY QKQPVSLYDQ MFLSSSFVSS NSSSSSTKSS GRMLFPAQKP GEFRPATSSQ  300
SSGNDCQLPA WSGYSHHTSS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23123184163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G076800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310625.20.0ethylene-responsive transcription factor ABR1
TrEMBLB9HGC60.0B9HGC6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s07090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-28ERF family protein