PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.007G013600.1
Common NamePOPTR_0007s13990g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 558aa    MW: 61225.9 Da    PI: 9.1581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.007G013600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06503526326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C++f+    C+ G+ C+F H+
  Potri.007G013600.1 503 QKPCMYFRTPKGCRNGSDCHFQHD 526
                         789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.69500528IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4504527IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MKRSRKSNRV SWAPGLYLCQ VRLFLSEDCP SEVGGQVRDL LQKNASRLLP ISSSKDSNDL  60
PPGFEGTHFL NPCIKELSCI PRVQWKCPPN FVVNYNWHVT DGEESQESEA QKLREMRVLE  120
AVYPRPSSVP PSPAVSLDVE EENYDDSLTP IIPLIPVEEE EAAEMPPALT EPLKNPTTSL  180
SPALPPVLLS SGILNSSKCN TPALNPPASQ KPELGRLPDP GTHPITAASA AVTAIMKSKE  240
QGGLIDTDLL VKIFRDPKMV DKLISGNQTP PVTSRPVSSS RSPLYAKPAM VSAPSPANGN  300
LQHLPSEELP WSKPTGQIPI PCPKPAVHFP SMPYDGSLHH QLSQVQTTVT RTSMHQDAVP  360
ATGLGVPVPI QEPGKVSAPR PPVGHLFSAS NSMQTTPSLV PTESKTPQIS YFKDIHPNPM  420
FDLVKSTLVK KPKQPISVPQ AGKKTNLVKD VNYIKNLIKE HGTAKKEMKD RNLFHNGSHY  480
YNHTQNPESI QNSKNRELKP KFQKPCMYFR TPKGCRNGSD CHFQHDMSFQ FQTGSGDSKL  540
QVAKRMKFSG EITAGRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.17280.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.007G013600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2144170.0AC214417.1 Populus trichocarpa clone POP037-E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310301.10.0zinc finger CCCH domain-containing protein 6
TrEMBLB9HFK40.0B9HFK4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF868379
Representative plantOGRP212968