PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G256300.1
Common NamePOPTR_0006s27240g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 671aa    MW: 77830.4 Da    PI: 6.709
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G256300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98.1e-2459143190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn YAke GF +r+s+s  +++ +e +++++ Cs  g++++++ +     ++r+etrtgC a++++++ ++++w++ ++eleHnH+++
  Potri.006G256300.1  59 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVDVELEHNHPVN 143
                         6*********************999*****************99888.....9**********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2159144IPR004330FAR1 DNA binding domain
PfamPF105516.0E-24266351IPR018289MULE transposase domain
PROSITE profilePS509669.112552588IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4556585IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-7563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEEVCLNSEP VFDEGDDYEV EGDSSAVGCD DETGENCSKK ERPEPTVGLE FDSFDEAYDF  60
YNVYAKEQGF GIRVSNSWFR SKRKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMVV  120
IRLVDSKRWR IVDVELEHNH PVNPQIKRFY KSHKRMILAA KKAQPPPEPV TEVHTIRLHR  180
RALMNTGCNV YLNVDERGHV DHVDHFKHLE LKEGDALAVY NYFCRMKLTN PNFFYLMDLD  240
DEGRLRNVFW ADARSRVAYG FFCDTVTIDT TCLANRYEIP LISFVGVNHH GQSVLLGCGF  300
LGHESMEYFV WIFRAWIKCM QGHLPQVIIT DQNKPLQSAV SEVFPNARHC YNVCCITQRV  360
PERLGGLQGY EAIKRQLNKA VYNSLKIAEF ETSWADMIKC HGLGDNKWLQ TLYKERQAWV  420
PVYLKDIFFV GMIPIQEDES LNAFFDGYVH KHTSFKEFVD KYDLALHRKH MKEAMADLES  480
TNSSYELKTR CNFEVQLSKV YTKEIFRKFQ SEVEGMYSCF NTKQLRVNGQ IATYIVKERV  540
EVAGSEKEVR HFEVLYDTSQ ADIRCICCLF NYKGYLCRHA LNVLNYNGVE EVPSRYILPR  600
WGKDYKRRGL LDHNSGDVDV DNPIYWHNLL YRYAIPVVEV GAESSDHYKI ALQELEELLN  660
KFNLAEDNLV *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G256300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134250.0AC213425.1 Populus trichocarpa clone POP064-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309639.30.0protein FAR1-RELATED SEQUENCE 6 isoform X1
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2K2A8A90.0A0A2K2A8A9_POPTR; Uncharacterized protein
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]