PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G238600.1
Common NamePOPTR_0006s25500g, TINYL5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 258aa    MW: 28211.3 Da    PI: 6.1356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G238600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1959109155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa+++++g
  Potri.006G238600.1  59 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEKAARAHDAAALSIKG 109
                         68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-1359109IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2160118IPR016177DNA-binding domain
SMARTSM003801.1E-3660123IPR001471AP2/ERF domain
PROSITE profilePS5103223.24860117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3260118IPR001471AP2/ERF domain
PRINTSPR003672.0E-106172IPR001471AP2/ERF domain
CDDcd000183.36E-2161119No hitNo description
PRINTSPR003672.0E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSDHQQQNLE TESSSTKAFS PPSPSSPSSN SNPSKKHQQD QDFSPCKKIT RIRDSSKHPV  60
YRGVRMRNWG KWVSEIREPR KKSRIWLGTF PTPEKAARAH DAAALSIKGN SAILNFPELA  120
NSLPRPASLA PRDVQAAAAK AAQMDNFDQK SETTTTTTAS SSSSCTSSLT SLVSLMDLSS  180
QDEELSEIVE LPSLETSYDE LNNDFVYSDS VYGWMYPPPW MQSVENICLS GGGVGENTTT  240
TAGLISILKQ AEAFKNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2055121976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.70300.0bud
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G238600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559240.0EF155924.1 Populus trichocarpa TINY-like protein (TINYL5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382048.21e-172dehydration-responsive element-binding protein 3
SwissprotQ9LYD37e-72DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA9PL740.0A9PL74_POPTR; TINY-like protein
STRINGPOPTR_0006s25500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]