PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G229200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 356aa    MW: 39445.5 Da    PI: 9.0918
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G229200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.2e-19222255134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Potri.006G229200.1 222 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 255
                         *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.6E-20216267IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-12216256No hitNo description
PROSITE profilePS5011412.848216252IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-15220255IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.83E-14221253No hitNo description
PfamPF003201.1E-16222255IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTDQMKKEKS WAIFPLTDVP CLLFFILFHI VHLYWTAGAA AKLSLPHPPS PSMTPAYLNP  60
ASSSFPFVDL REEQNLQLFL SPHQAATSLS GPTNFFNTSA HDHQRETKPG ESRQHDNQEV  120
DMYNISHGGS SSSFQPEVND HNYNSNFHNL SSSKMEDGAE ESGESSVKWM PSKMRLMQKM  180
TNSNCSETDH MPMKFMLKFH NQQYQNNEIN SSSNSNSNIR VCSDCNTTST PLWRSGPRGP  240
KSLCNACGIR QRKARRAMAA AAAAANGTVI AIEASSSTRS TKVNNKVKKS RTNHVSQNKK  300
LSKPPESSLQ SQKKLCFKNL ALSLSKNPAL QQVLPHDVEE AAILLMELSC GFIHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.174990.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476140.0EF147614.1 Populus trichocarpa clone WS0123_N07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308561.20.0hypothetical protein POPTR_0006s24560g
TrEMBLA9PGX10.0A9PGX1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-29cytokinin-responsive gata factor 1