PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G202500.1
Common NamePOPTR_0006s21700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 289aa    MW: 31912.1 Da    PI: 6.7757
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G202500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.84.2e-371468761
              zf-Dof  7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  Potri.006G202500.1 14 SCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68
                        7***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-26167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7141367IPR003851Zinc finger, Dof-type
PfamPF027012.2E-311467IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101551IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
METGWKGNSE ISPSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG  60
GCRKNRRGKS LRLSSNDHSK SFGCGGLPNN SIRHPHSHKG NSSIESSSSP MIPDGSHIDL  120
ALVYAKFLNP QQDSKSGCEV PEFTSEFDPS LIFTNILNTN LEPSSQLSEE NGPAGCLTTS  180
DFSTKAPLSD NDHLMYYYSL DSAHKHQDHQ DRTKQCTSND TSSFHLPPLP GQDTASQEIL  240
WSNSHLMGNH NLEMSQQPVL GPETQDPNLL FGNWSPFDLS SDDTFSRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G202500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309254.10.0dof zinc finger protein DOF3.5
TrEMBLB9H9K80.0B9H9K8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-55Dof family protein