PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G191900.1
Common NamePOPTR_0006s20620g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 235aa    MW: 24732.1 Da    PI: 10.3043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G191900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-073660226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k ++C  f+ t  C++G++C+F H 
  Potri.006G191900.1 36 KLKPCTKFFSTAGCPFGESCHFLHH 60
                        6689********************6 PP

2zf-CCCH34.92.7e-11201225126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++fa+ G C +G rC+FaHg
  Potri.006G191900.1 201 YKTKLCDNFAK-GSCTFGQRCHFAHG 225
                         9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.533461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6433462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-63561IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-83660IPR000571Zinc finger, CCCH-type
SMARTSM003225.8E-9107177IPR004087K Homology domain
PROSITE profilePS5008412.852108172IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-14109177IPR004088K Homology domain, type 1
SuperFamilySSF547911.1E-12109177IPR004088K Homology domain, type 1
CDDcd001053.47E-12110173No hitNo description
PfamPF000131.0E-10110174IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.9E-16198231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-9199231IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7200226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014200227IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9201225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDTRKRGRPD FKTNGFGGFK KSKQEMDPLS TGVGSKLKPC TKFFSTAGCP FGESCHFLHH  60
VPGGYNAVTQ MMNLGPTVTP PSRSVPGHLG GRVEQPSPGP ATSFGVFATT TRISVNASLA  120
GFIIGKGGVH SIQICHQTGV KLSIKEHETN PNLKNIELEG SFEQIAQASK MVEELVKVNS  180
AKAAAKTSGG RGGHANPGSN YKTKLCDNFA KGSCTFGQRC HFAHGAAELR KTAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G191900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462245e-44BT146224.1 Lotus japonicus clone JCVI-FLLj-17O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033221.11e-135PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ9FG308e-95C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLU5FQC51e-133U5FQC5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20620.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-97C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]