PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G167700.1
Common NamePOPTR_0006s18330g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 546aa    MW: 59523.4 Da    PI: 8.3031
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G167700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.2e-15172231155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.006G167700.1 172 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 231
                         57*******************666664477446*************************98 PP

2AP247.15.8e-15274325155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.006G167700.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 325
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-17172241IPR016177DNA-binding domain
PfamPF008473.2E-12172231IPR001471AP2/ERF domain
CDDcd000188.69E-23172241No hitNo description
SMARTSM003804.6E-30173245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-16173240IPR001471AP2/ERF domain
PROSITE profilePS5103219.23173239IPR001471AP2/ERF domain
PRINTSPR003672.4E-6174185IPR001471AP2/ERF domain
PfamPF008477.2E-10274325IPR001471AP2/ERF domain
CDDcd000184.55E-25274335No hitNo description
SuperFamilySSF541717.85E-18274335IPR016177DNA-binding domain
SMARTSM003801.5E-33275339IPR001471AP2/ERF domain
PROSITE profilePS5103219.045275333IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18275334IPR001471AP2/ERF domain
PRINTSPR003672.4E-6315335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDSSSHQNWL GFSLSNHHHM NNTINIPTSS DSSHLCLFEA FNTTTTSAQE VNAVVAAGRA  60
TDISLFTASG PKLEDFLGGC TSTSPSQTPQ QQPLCGQFST ETPVTTTATA LSDSTSSEIY  120
DSELKTIAAS FLRGFASTDH QKIDSTQKHQ QLLVQAEHAP KKTVETFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV  240
SNYEKEIEGM KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  300
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK NIANSNLPIG GISGKSKNSS  360
ESASDSKSID GSRSDDRDLS SASSVTFASQ PATSTLSFAI PIKQDPSDYW TNILGYQNTT  420
TMNNAKNSSS SIVDPSTLLQ SSTSGPAFQS PTVFKMDFNA NSSVNESNNN GLLFNGGYTQ  480
QQISGIGTSS PSSNIPFATP IAFHSNGNSY EGNPSYSSWI AQPLHSFQSA KPKLSVYQTP  540
IFGIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.70840.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453130.0EF145313.1 Populus trichocarpa clone WS01123_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381802.10.0hypothetical protein POPTR_0006s18330g
SwissprotQ6PQQ31e-170AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLU5GBJ10.0U5GBJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-147AINTEGUMENTA-like 5