PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G163400.1
Common NameTINYL3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 290aa    MW: 31394.2 Da    PI: 5.7952
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G163400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-1868118155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Potri.006G163400.1  68 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 118
                         579****998.**********854...59**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-1268118IPR001471AP2/ERF domain
PROSITE profilePS5103222.62969126IPR001471AP2/ERF domain
SMARTSM003803.1E-3469132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3069126IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2169126IPR016177DNA-binding domain
PRINTSPR003671.7E-97081IPR001471AP2/ERF domain
CDDcd000181.58E-3070126No hitNo description
PRINTSPR003671.7E-992108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTDPPTSNSN SKKDSSSIYS YSSSSPTPSS TSSSGLSPNP VSKPDPEKNL RKPKRPRETN  60
SSNNSKHPVF RGVRMRTWGK WVSEIREPRK KNRIWLGTFS TPEMAARAHD VAALSIKGNS  120
AILNFPGLAG SLPRPASNSP RDVQAAAAKA ASMDFNSTVT TVTTNVCNDE NNSNNNSTAS  180
NNNGSSSSQM TQSSSSSSSS SSSSTVRVTS DVATPEELSE IVELPSLETS YEESPEFVLF  240
GDSWPYINQS WCYEDYGVKS NGYFSDQYLS IIPENNVITS GFETLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1964126972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G163400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559220.0EF155922.1 Populus trichocarpa TINY-like protein (TINYL3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459367.10.0ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0804e-54ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A2K2A3A40.0A0A2K2A3A4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s17670.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]