PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G143200.1
Common NamePOPTR_0006s14560g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 386aa    MW: 42986 Da    PI: 9.1026
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G143200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.66.2e-2579122144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  Potri.006G143200.1  79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 122
                         79***************************************997 PP

2QLQ59.78.2e-211044236
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                        +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+
  Potri.006G143200.1 10 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 44
                        8******************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-12945IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-151043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.7411045IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.88879123IPR014977WRC domain
PfamPF088792.1E-2080122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIMSGGNRFP FTASQWQELE HQALIYKYMV SGIPIPPDLL FTIKRSGCLD SSLSSKLFPR  60
QPPHFSWGCF QMGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP  120
VEVATQSITA PTVSSMTRNH SNNSLLTTSP TSLSLLSPKT HHQNHLHYPA PAGYHAHPNH  180
QFLSSSRPLG IGLSPHENPT HLLLDSGGSS LANTDYRNRN VYGLKEEVDE HAFFSEPSGS  240
MRSLSGSSLD DAWQLTPLTM NSSPSTTNSS KQRSLSSLHN EYSYLQLQSL SDPDTPKQQK  300
QCQHNYLLGS SDVDSLGPIK MEKEKSQKTV HRFFDEWPPK DKDSWLDLDD KSSKSASVSA  360
TGLSISIPSS HDFLPIFSSR TNNGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.144210.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G143200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826621e-145AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381639.20.0growth-regulating factor 1 isoform X2
TrEMBLA0A2K2A2B40.0A0A2K2A2B4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-58growth-regulating factor 5