PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G138800.1
Common NamePOPTR_0006s14100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 210aa    MW: 23414.1 Da    PI: 4.6476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G138800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-181666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++kGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Potri.006G138800.1 16 SKFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66
                        79*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-111666IPR001471AP2/ERF domain
CDDcd000183.64E-291676No hitNo description
SuperFamilySSF541712.68E-201675IPR016177DNA-binding domain
PROSITE profilePS5103221.7331774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-281775IPR001471AP2/ERF domain
SMARTSM003808.4E-331780IPR001471AP2/ERF domain
PRINTSPR003675.5E-91829IPR001471AP2/ERF domain
PRINTSPR003675.5E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVKHSVEKPV AERSDSKFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA  60
LFCLRGRVAK FNFPENPPNI AGGRSLSPAE IQEAAARFAN SEPQRSQPDR FETDQSVSLS  120
ESRAESPCPS VVSDGTVQME GGELMWDGPF LDMLMNTGSC NHSTEYGIFQ GFDDLYSDFF  180
PPSLIPNLDY GEETNLDGVL EQGSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1516751373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G138800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559520.0EF155952.1 Populus trichocarpa RAP2-like protein (RAP2L11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458985.11e-154ethylene-responsive transcription factor ERF017
SwissprotQ84QC26e-60ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2K2A2311e-153A0A2K2A231_POPTR; ERF family protein
STRINGPOPTR_0006s14100.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]