PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G081100.1
Common NamePOPTR_0006s08100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 433aa    MW: 46503.1 Da    PI: 8.6626
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G081100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.52e-12427226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k e+Cr+f+r G C+yGdrCkF H+
  Potri.006G081100.1  4 KKEPCRNFQR-GSCQYGDRCKFLHV 27
                        99********.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.619229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.53E-6329IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10327IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MYKKKEPCRN FQRGSCQYGD RCKFLHVTPQ QPPKSSNNPF GFGNQQTPNN NNNNSFGFGN  60
RQQQQRPNSP FGSAPNNSAN NRPQQFKPFE NKWSRGASAP SSRQRPDSQP ANHNCADPDS  120
CKRLIAEDFE HERPLWKLTC YGHLRDGPCD IIGDVSYEEL RAAAYDDYKR GLSLQSIVEK  180
ERNLLNSKLI EFNNLLHNPS IAPSKPAPAG QSPFFRATAN ATPAAAQNTA PPSVSSFGQL  240
GTSLNMRSAT PSNNAFGQPS QPLTAFGVSP SAPSNNVFGQ SNLPSNSSQT VSAFGTNNFL  300
SANASNSSQT SSAFGTTSFP SINAGLLGSQ LPNQALGNSF SPNIAGFGNS GVNSIQNISS  360
SPLSMQNPSI HPLSISNGLN SAFNAAGQAT TNVQPVTMVQ RETVSGDASI WLKEKWIPGE  420
IPEEAPPEEY VF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G081100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308140.20.0zinc finger CCCH domain-containing protein 46 isoform X1
TrEMBLB9HBD40.0B9HBD4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s08100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-58C3H family protein