PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G039800.1
Common NamePOPTR_0006s03820g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 500aa    MW: 54169.1 Da    PI: 8.4632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G039800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.32.9e-1974163291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek.errtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +Y+eYA +vGF++ k++ +ks ++g+++  t+ Cs++gk+ ++ ++t++ + r+r   rt+Ckakl+v+   dg+ +v ++ leHnHel+p
  Potri.006G039800.1  74 YYDEYACHVGFNTIKKS-TKSGDDGNVKYFTLACSRSGKELPSASQTNRfNFRKRLPPRTNCKAKLNVTIGPDGRVYVCRVILEHNHELVP 163
                         9***********99886.66679999**************99998844415679999********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1774163IPR004330FAR1 DNA binding domain
SuperFamilySSF1009501.44E-35253401No hitNo description
HamapMF_0017029.2253480IPR020672Ribose-5-phosphate isomerase, type A, subgroup
Gene3DG3DSA:3.40.50.13604.2E-45257394No hitNo description
TIGRFAMsTIGR000212.8E-59258473IPR004788Ribose 5-phosphate isomerase, type A
CDDcd013981.98E-79258470IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060269.8E-49307472IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754451.44E-18383459No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-23395458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEDDSKMNVI VDTKVNVTVE KDIEGRNDKM VVDSDEVIVI NIDEKESEGV GNDDEMKPPS  60
IGMVFNTPDE VRSYYDEYAC HVGFNTIKKS TKSGDDGNVK YFTLACSRSG KELPSASQTN  120
RFNFRKRLPP RTNCKAKLNV TIGPDGRVYV CRVILEHNHE LVPGLHGMKK KKSRAPRAKK  180
VGTGQSQVPH SVVHEAGSSA NLKSDCAIPR IVTDPSQIIF GSSHLLTKRS VNRNVSSGSK  240
RRNSVFASPV LNQESTERIL ARKAVELVKS GMVIGLGSGT TISMVMEELG RLIREGKLKD  300
IIAVGGNYQS RVLATQFGVT VVDLSGVSKI DIAFDGVDEV DFNKNLLKCG GPAHTMQKVI  360
DSVASECIIL VDQPKVVHRL GSAFPVPVEV LPPALTPVLK RLATLGGVPE IRFTSNENGP  420
LFTDLGNMVV DVSFPNGIQN PAELEKNIKL LPGVVENGIV TGVATTVLVA VKERGAVNVM  480
NLEDYVRTVL DRRDGTLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk5_B2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk5_C2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk5_D2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk7_A2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk7_B2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk7_C2e-502514731222D-Ribose-5-Phosphate Isomerase
1lk7_D2e-502514731222D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G039800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2779586e-70GU277958.1 Populus balsamifera isolate FRE01 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779596e-70GU277959.1 Populus balsamifera isolate FRE01 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779606e-70GU277960.1 Populus balsamifera isolate GAL12 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779616e-70GU277961.1 Populus balsamifera isolate GAL12 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779626e-70GU277962.1 Populus balsamifera isolate GIL14 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779636e-70GU277963.1 Populus balsamifera isolate GIL14 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779646e-70GU277964.1 Populus balsamifera isolate HAY07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779656e-70GU277965.1 Populus balsamifera isolate HAY07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779666e-70GU277966.1 Populus balsamifera isolate INU03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779676e-70GU277967.1 Populus balsamifera isolate INU03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779686e-70GU277968.1 Populus balsamifera isolate MGR10 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779696e-70GU277969.1 Populus balsamifera isolate MGR10 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779706e-70GU277970.1 Populus balsamifera isolate NWL07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779716e-70GU277971.1 Populus balsamifera isolate NWL07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779726e-70GU277972.1 Populus balsamifera isolate RNA13 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779736e-70GU277973.1 Populus balsamifera isolate RNA13 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779746e-70GU277974.1 Populus balsamifera isolate STO11 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779756e-70GU277975.1 Populus balsamifera isolate STO11 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779766e-70GU277976.1 Populus balsamifera isolate WHR03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779776e-70GU277977.1 Populus balsamifera isolate WHR03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307978.20.0probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1
TrEMBLB9H9330.0B9H933_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642057
Representative plantOGRP1037723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-12far-red elongated hypocotyls 3