PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G031100.1
Common NamePOPTR_0006s02960g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 174aa    MW: 18992.4 Da    PI: 10.4695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G031100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134062123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+  Fs++  L  H++ H
  Potri.006G031100.1 40 FRCKYCKNKFSTSQALGGHQNAH 62
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-63668No hitNo description
Gene3DG3DSA:3.30.160.604.5E-43666IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1984067IPR007087Zinc finger, C2H2
PfamPF139123.7E-64064IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSSLERNRAS ENMDNNGSNN LDLNLMDFFE VKSNGGKRMF RCKYCKNKFS TSQALGGHQN  60
AHKRERAIEK RDNGGAMHYP SLGKTLGVDM SSMIHKPAYN HWFRGGGIAN GGHYSGLSRA  120
SIMNHHPRLQ QLQNGGLQSL ASMVPNAVNL GGSTSTSLKQ KEEGKGLELS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G031100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167630.0AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307946.21e-125zinc finger protein 3
TrEMBLA0A2K1ZVZ81e-124A0A2K1ZVZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02960.11e-124(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1747547
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-14C2H2 family protein