PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.006G000800.4
Common NamePOPTR_0006s00290g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 308aa    MW: 33656.8 Da    PI: 6.8924
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.006G000800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085.2e-342175155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Potri.006G000800.4 21 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 75
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851878IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-322076IPR009057Homeodomain-like
SuperFamilySSF466897.53E-182075IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-252176IPR006447Myb domain, plants
PfamPF002491.2E-92374IPR001005SANT/Myb domain
PfamPF143791.6E-23107153IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTMDPINGGN NLNNNPNLAS KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG  60
LTIYHVKSHL QKYRLAKYLP DSSSDGKKAD KKETGDMISN LDGSSGMQIT EALKLQMEVQ  120
KRLHEQLEVQ RQLQLRIEAQ GKYLKKIIEE QQRLSGVLED VPGSGVAAPV SGDNCPESDK  180
TDPATPAPTS ESPLQDKAAK ERAPAKSLSI DESFSSQPEP LTPDSRCNAG SPAESPRGER  240
SMKKQRVSIG VTYGKQEMVL THQILESSLN SYPRPHSAFL GREQFDPSSG LSMGIEDQME  300
KVSGSDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-242178158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.006G000800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2248470.0CU224847.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380859.20.0myb family transcription factor PHL7 isoform X1
RefseqXP_024459395.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_024459396.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_024459397.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_024459399.10.0myb family transcription factor PHL7 isoform X3
RefseqXP_024459400.10.0myb family transcription factor PHL7 isoform X3
SwissprotQ9SJW01e-135PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K1ZUI10.0A0A2K1ZUI1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s00290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-111G2-like family protein