PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G252800.1
Common NamePOPTR_0005s27410g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 217aa    MW: 24642.9 Da    PI: 5.9628
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G252800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.8e-2177137257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         r+R+t+++ qle+Le+ F++ n +p ++++++++k+l    +++e++V++WFqNrRa+ k+
  Potri.005G252800.1  77 RQRWTPKPAQLEILEQIFKQcNATPGRQKIKDITKELaqhgQISETNVYNWFQNRRARSKR 137
                         89*****************99**************************************97 PP

2Wus_type_Homeobox96.32.5e-3176139265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +r+RWtP+p Q++iLe+++k+   tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  Potri.005G252800.1  76 SRQRWTPKPAQLEILEQIFKQCNATPGRQKIKDITKELAQHGQISETNVYNWFQNRRARSKRKQ 139
                         589***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-1869140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-1770141IPR009057Homeodomain-like
PROSITE profilePS5007114.67373138IPR001356Homeobox domain
SMARTSM003892.7E-1375142IPR001356Homeobox domain
PfamPF000461.8E-1877137IPR001356Homeobox domain
CDDcd000863.28E-1477139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDGKFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSVHQ DFAGMRLGNP  60
YFCDPLLSSS VHKIGSRQRW TPKPAQLEIL EQIFKQCNAT PGRQKIKDIT KELAQHGQIS  120
ETNVYNWFQN RRARSKRKQS ALLPNSGESE VETEIEPFKE KKTKPEDNQP DEDATPVSDH  180
MYLHSPDIGI DQLVGKMESP GSCIPYWQLE QYDLFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G252800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827130.0KF982713.1 Populus tomentosa WOX13b (WOX13b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306983.11e-163WUSCHEL-related homeobox 8
SwissprotQ5QMM34e-67WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLB9H5J31e-162B9H5J3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s27410.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-64WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]