PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G214800.1
Common NamePOPTR_0005s23640g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 360aa    MW: 40692.4 Da    PI: 5.3735
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G214800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.4e-35461372102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+++++++sw++ g+sfv +d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F  g+k+
  Potri.005G214800.1  46 FLTKTFDMVDDPTTNHIVSWNRGGSSFVAWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLSGQKH 127
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+k 
  Potri.005G214800.1 128 LLRNIKRRKA 137
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5942135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.1E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNPFFTVKQE YAGSSSSPPS GGDEPPPVML PPQPREGLHD TGPPPFLTKT FDMVDDPTTN  60
HIVSWNRGGS SFVAWDPHSF STNLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLSGQKHLLR NIKRRKAPSQ PLTQQQAPDA CVEVGRFGLD GEIDRLRRDK QVLMMELVKL  180
RQQQQNARSY IQAMDQRLQA IEQKQQQMMQ FLARAMQNPA FLQQLVQQKE KRKELEEAMT  240
KKRRRPIDQG SSRGGGGRRG GESSHIGGSA NPIKAEPLES GDLEFEVSEL EALALEMQGY  300
GRARREQEDG VEELETPESK DRELDEGFWE ELLNESAGGD EDDVNTLAER LGYLGSSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-244413527129Heat shock factor protein 1
5d5v_B6e-244413527129Heat shock factor protein 1
5d5v_D6e-244413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230244KRKELEEAMTKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139870.0KP013987.1 Populus simonii heat shock transcription factor A7a1 (HsfA7a1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306796.20.0hypothetical protein POPTR_0005s23640g
SwissprotQ9LUH81e-131HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9H8D40.0B9H8D4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s23640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122heat shock transcription factor A6B