PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G195000.1
Common NamePOPTR_0005s21690g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 453aa    MW: 48539.3 Da    PI: 8.6016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G195000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19218267255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Potri.005G195000.1 218 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 267
                         7********.**********7.....337************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-13218267IPR001471AP2/ERF domain
PROSITE profilePS5103225.686218275IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22218276IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-32218276IPR001471AP2/ERF domain
SMARTSM003809.1E-37218281IPR001471AP2/ERF domain
CDDcd000184.57E-21218277No hitNo description
PRINTSPR003671.7E-11219230IPR001471AP2/ERF domain
PRINTSPR003671.7E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MCVLKVANPR GNSGEYSRYP YTDSDDNQEE RSYTAQQIFS ELNQPIQRHV EVTQSPHMFM  60
GYSSSAEMSA MVSALTHVVS GHRGSTSDWG SYGASGLGGA TITSTIVQAA PGSNTSPASP  120
SLSAYSSTSG SGSWIGQKRG REKEAGAAAQ LKESLPRVHR GFDDFRSSLG DSSSSGATAT  180
EEVSASTLVF STTATPSTTA TPSSETASLG ETGERKRRYR GVRQRPWGKW AAEIRDPHKA  240
ARVWLGTFET AEAAARAYDE AALRFRGSRA KLNFPENARL LPAQMQNVTA SQVPISRSQL  300
PSHHQLQSIS SPRQQAQRPQ VPAPALFQSQ PDIIRDYWEY SQLLQSSGDF HGQQQPPPSN  360
LLEQMFYNPQ LASLQSSTLS SLPSSTSGSS FAAVPSGSIS STLSPSASSF PLLFAGQQLG  420
YFRPPENQNP AAGSDFPVPP WTDCSRRPSS TG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23217275160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.66780.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G195000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456284.10.0ethylene-responsive transcription factor ABR1
TrEMBLA0A2K2AJ340.0A0A2K2AJ34_POPTR; Uncharacterized protein
STRINGPOPTR_0005s21690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-28ethylene response factor 110