PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G182900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 1952aa    MW: 214843 Da    PI: 8.0158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G182900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.47.8e-0618271848627
                          -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                          C+++ +tG C+ G++Ck +H++
  Potri.005G182900.1 1827 CPTYEATGSCPQGSKCKLHHPK 1848
                          *****************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.007617171745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.17817171746IPR000571Zinc finger, CCCH-type
SMARTSM003567.617461770IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.17417721798IPR000571Zinc finger, CCCH-type
SMARTSM003560.005117721797IPR000571Zinc finger, CCCH-type
SMARTSM003569.517991825IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.54418211849IPR000571Zinc finger, CCCH-type
SMARTSM003560.4918261848IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1952 aa     Download sequence    Send to blast
MEYHKYDPNA RASRKSKDRT IATTAMTPPS SYFHYTKYAK HSSPTPSPRY PNNLNFHHHS  60
NFLEPPPPPQ TPPPPPSFPQ FSSRNPHFSY NPSPNHPQIH DNYNHQRSHH DLPHSTQLPW  120
VSHQLYDDRQ PPRRLPEFDH CVHEPRPDFT FLRDDHMQTR HELEGDPNPN SRLVQDRNVV  180
TDGESEHRRR RGEFGSNSDR SSSSVFRTVS NQLRGFKSNS GNYENRRRLN YDYHEKGSAN  240
QRWVHDREVM GESRDSLIEL GSNEIGDGEN RILAGKREHY RIRDGNLELE RNGGKRSREG  300
SYEFNRTPRK QLQKKSALLR LQKPSYRNRE DKRVHYSSYA DYTKSSPFRG KHQESGFLRG  360
KDKDKVLHAD RGMVEGARER SPVELDVSFK SNSLVAKAIL TPTLSSAGAS EMNLTPRNRK  420
VRKVLVPAKD MDSLNSSMHK LNKVALGLDE AASVANKTSS SNKELKKSKE VVTASGITNV  480
RDSSSLPMKR TVSLGSGTNL VSGKTSSLKG GKKKKVVKRV VKKVVNHKST LSSSQPTKTC  540
DEPVKADSFA YNPTEPIDPD KAATVADIVD PQPCPNEATA MPKNDKVERF DKFMESGLVG  600
AGADSGNLFV FNINGNKSRS ASPSGFSNHE ETKFGESFIN GDCDKGLHAI ADTENSLKKS  660
LDETFRSDIG GVEDVSKQPC QNGDSCLFED NAVSGSLKVL DYMEGNTDFG SLSSEKTIIH  720
EGPMNTCMPL MGLDTASMNS QERITVFDAG ASDVGCKEPC RNLGSPSAEN GITDLLQGAS  780
FPVVNNRSFS VSISGETGIQ NDVIRPNQGV GAILVSPSCC TNSEEINISV HGTGDDFSEQ  840
LSQDGVTKTL ESASIGGSLD TKVSAGGSDE DATDITKNDK KIEVPQLDLS RTDVSYMHLD  900
PANMVTSTTA HWVDKTLRLC FEDSATAECT FSGSQFVDVG SQSCNIVSVL HEGSLTDVSA  960
GRDSVRRSDD VGPSNVSPRN EKNRKFSAPQ LELNSPQESD ADEGTVFAEE EAVVSDMDFL  1020
CTSDFLPAQK RITASLENCS AGEHTVAAVK DAFEDDGQKD VKSHFAVEEL AVTKVTSRDL  1080
VVLGGKDIIN ATPVVVGSSN PNDSMDVDAG EGDKMDINAA EEQVVIDGGI DPCQIPSKLQ  1140
TQVLTEKLPR IDVEDSDFHG VKNNSPCMSN NLSSFEDGFG VSTINSSEEL MAFVPETLSD  1200
RGFPETLPDV LGTSLSKNPV EKVHGYHDKI LAERPAINVG SNSSICTTSS QSGKIVLKSD  1260
HAVEGDRLLA RRTGHFPSQD SKITTRTQNA VSGQLYGRKN QTNCAVSEIY PGRSSFVFTA  1320
SKSTASSSRN SKTQTWHRTD SSSDSAPPAK KAFSSTVHAQ MQFPRKTDKL QSTSYIRKGN  1380
SLVRKPISVA QSPDPHGLSS SVYQLNSSGT NEPKKSTGSD SRIDIVDPLD VVRKGGMNAS  1440
CERPKTPPLS SVPKIPNQAT NALGVRVSSP LAEHLHSLST ETATASAEFM ESNDVPKSSD  1500
NLLKISESPI TQNSQINNLE CNGDLNEDNK VVLANVKNLT YVKRKSNQLV ATSNPCASSV  1560
QNACNTSSSD SYYKRRRNQL IRTSLESQVK QTTSIPDESL NSEGQTALYS FFSGNFSKRR  1620
LRKGERIFRV GLVRYKMDSS KRTLQRISGD ESSCSGALQK EKDAKKSYVP RRLMIGKDEY  1680
VRIGNGNQLI RDPKKRTRIL ASEKVRWSLH TARSRLARKR KYCQFFSRFG KCNKDDGKCP  1740
FIHDSSKIAV CTKFLNGLCF NPECKLTHKV IPERMPDCSY FLQGLCTNKD CPYRHVRVNP  1800
NASICEGFLR GYCADVNECL KKHSYVCPTY EATGSCPQGS KCKLHHPKNR SKEKKSKRSR  1860
DNNAQGRYFG LMHASTTELR NPVPGKLNVL DNDAISFKGS IADYISLDVI DEVVENTIPA  1920
DEHTALGDSD PLELQLGDLD ELIKPVRIMN I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C2e-181723184841168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C2e-181723184841168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G182900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457106.10.0uncharacterized protein LOC18099604 isoform X1
RefseqXP_024457107.10.0uncharacterized protein LOC18099604 isoform X2
TrEMBLA0A385JI130.0A0A385JI13_POPTO; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGPOPTR_0005s20550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010
Representative plantOGRP457355