PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G176000.1
Common NamePOPTR_0005s15830g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 218aa    MW: 23843.8 Da    PI: 5.7934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G176000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-183180255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa  +l+g
  Potri.005G176000.1 31 KYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALFCLKG 80
                        8*****998.**********9...336************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-293088IPR001471AP2/ERF domain
PfamPF008471.8E-113180IPR001471AP2/ERF domain
SMARTSM003801.8E-343194IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-193189IPR016177DNA-binding domain
PROSITE profilePS5103221.8123188IPR001471AP2/ERF domain
CDDcd000182.29E-203190No hitNo description
PRINTSPR003671.4E-83243IPR001471AP2/ERF domain
PRINTSPR003671.4E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVKSEHRIQS EASKPVAISS TPSPSACKKR KYKGVRMRSW GSWVSEIRAP NQKTRIWLGS  60
YSTPEAAARA YDAALFCLKG SAAALNFPIT SSHYIPDTVM SPKSIQRVAA AAANSFVDNP  120
TTPQSSSPPL PCSSSSSSSI SSPPSVVSSP SDIQLDDYIS LMESFETNNE PVSMLDSWYN  180
FDVLQSPKYL DLNWVSFNPP MIDDLYEGDL RLWSFAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152889264ATERF1
3gcc_A4e-152889264ATERF1
5wx9_A6e-1531881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G176000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559571e-180EF155957.1 Populus trichocarpa RAP2-like protein (RAP2L16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307427.11e-157ethylene-responsive transcription factor ERF014
SwissprotQ9SFE41e-43ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLB9H7D01e-155B9H7D0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s15830.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-42ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]