PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G164100.4
Common NamePOPTR_0005s17160g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 670aa    MW: 72722.3 Da    PI: 4.241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G164100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-055881123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        y+C++C+ +F  +++L +H+ + H
  Potri.005G164100.4 58 YECHKCTLTFDGQDDLLQHLLSsH 81
                        99******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9745886IPR007087Zinc finger, C2H2
PROSITE patternPS0002806081IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MDGRIKLTDK IATSISADQT CKDGKNENDF ISYKALPVTS TSTETGGCPR EVQTGMNYEC  60
HKCTLTFDGQ DDLLQHLLSS HQRSPKQLKC GTSTNEEYCT NIIDDLDCSV AGDVRNLACI  120
NLNRVPPRLI EELNQGRGSD SGLLAPNAKE NMFNDDIIED RNCSSTIDNM VIDDWDADGK  180
GEPITGSCAA IAENVAANLK EQRSSEGCSV GLLNSIAVEI MQEKSSKGDL TGIENNMNSV  240
CTGMLNESKF DDVGKPGTNE LTSVCRDNNT ALVDDNVVIN EQGKNHGGCP VIPFLNEQMH  300
LAENNITGTP KCTIREPCQE EESEGGLLTI SGNEQSFDLK GNVIKVSKGT INVVNHNEVL  360
CLKNNEFGSE IDQSVQTLTN IQERSSNIFS FFPSTNGLTF ASKDEQSHDD ENSMNQLSCT  420
TSAEDKLQEA KTSCNGELCI AFGDNCTEQD ADIVTGTVQE ICFLFAGNQH TLTAKDNATG  480
PFNGTMDELK QKMDSVESVL CLSGDAPMRS VEKNLHTAFT GSIQEEPRVK NTENSKKDDL  540
GHDFSGHPGP NESVESEFVW RNEENGFEGL KSGGMENMEY NLLTSQVSSH SDESKVVSCD  600
AVIPQGFDSS VCLEKGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA QTSTMGFMCA  660
ECAARFSGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G164100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456911.10.0uncharacterized protein LOC7486594 isoform X3
TrEMBLA0A3N7F4P10.0A0A3N7F4P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17160.10.0(Populus trichocarpa)