PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G164100.3
Common NamePOPTR_0005s17160g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 920aa    MW: 100852 Da    PI: 4.4997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G164100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-05294317123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C++C+ +F  +++L +H+ + H
  Potri.005G164100.3 294 YECHKCTLTFDGQDDLLQHLLSsH 317
                         99******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.618168241IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.99E-8175247IPR016177DNA-binding domain
PfamPF014291.1E-5177235IPR001739Methyl-CpG DNA binding
Gene3DG3DSA:3.30.890.101.9E-6177261IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.974294322IPR007087Zinc finger, C2H2
PROSITE patternPS000280296317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MEMVGKNGVA VDFVALGNME DPYGEELRRR TEGMLGFSQG GVKSLEVNHL ISTRIAESSS  60
KKRKRGRPRK NENVDFGNNE LVERGKIENK TIVVVCDDVE VQNKKKEEME MVSKNGVVVD  120
FVALGNMEDP YGEELRRRTE GMQLKAEFLG FLEGFEGEWG STRKKRRIVD ASLFGDALPI  180
GWKLSICVKK QAGRVWLACT RYISPNGLQF VSCKEVSSYL LSFSGLHDVR RSNFDHMDGR  240
IKLTDKIATS ISADQTCKDG KNENDFISYK ALPVTSTSTE TGGCPREVQT GMNYECHKCT  300
LTFDGQDDLL QHLLSSHQRS PKQLKCGTST NEEYCTNIID DLDCSVAGDV RNLACINLNR  360
VPPRLIEELN QGRGSDSGLL APNAKENMFN DDIIEDRNCS STIDNMVIDD WDADGKGEPI  420
TGSCAAIAEN VAANLKEQRS SEGCSVGLLN SIAVEIMQEK SSKGDLTGIE NNMNSVCTGM  480
LNESKFDDVG KPGTNELTSV CRDNNTALVD DNVVINEQGK NHGGCPVIPF LNEQMHLAEN  540
NITGTPKCTI REPCQEEESE GGLLTISGNE QSFDLKGNVI KVSKGTINVV NHNEVLCLKN  600
NEFGSEIDQS VQTLTNIQER SSNIFSFFPS TNGLTFASKD EQSHDDENSM NQLSCTTSAE  660
DKLQEAKTSC NGELCIAFGD NCTEQDADIV TGTVQEICFL FAGNQHTLTA KDNATGPFNG  720
TMDELKQKMD SVESVLCLSG DAPMRSVEKN LHTAFTGSIQ EEPRVKNTEN SKKDDLGHDF  780
SGHPGPNESV ESEFVWRNEE NGGLRCDFAD TCQPVQASGF FPLYDAVSDK GESEHFGEAY  840
GVISGFEGLK SGGMENMEYN LLTSQGDLPF LPKNASRHHV PAVCVWCGRE ICQEAFESEA  900
QTSTMGFMCA ECAARFSGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G164100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456910.10.0uncharacterized protein LOC7486594 isoform X2
TrEMBLA0A3N7F4P10.0A0A3N7F4P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17160.10.0(Populus trichocarpa)