PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G164100.1
Common NamePOPTR_0005s17160g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1159aa    MW: 127818 Da    PI: 4.7036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G164100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05533556123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C++C+ +F  +++L +H+ + H
  Potri.005G164100.1 533 YECHKCTLTFDGQDDLLQHLLSsH 556
                         99******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF021780.11193203IPR017956AT hook, DNA-binding motif
SMARTSM003840.54193205IPR017956AT hook, DNA-binding motif
PfamPF021780.11301311IPR017956AT hook, DNA-binding motif
SMARTSM003840.54301313IPR017956AT hook, DNA-binding motif
PROSITE profilePS5098210.618407480IPR001739Methyl-CpG DNA binding
SuperFamilySSF541712.75E-8414486IPR016177DNA-binding domain
PfamPF014291.4E-5416474IPR001739Methyl-CpG DNA binding
Gene3DG3DSA:3.30.890.102.6E-6416500IPR001739Methyl-CpG DNA binding
PROSITE profilePS501578.974533561IPR007087Zinc finger, C2H2
PROSITE patternPS000280535556IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MATATVDSSV CNYQNQVHTE SLLLIDLRHL SQPELLSLSF CSSSSSLHRL QTDTADVSTP  60
KIDRSVFNES AGSRKQTFSR LRLAPRNNNA SSSSNSTPVV PYQITERHPL DEENSQIIYL  120
LKSLFGSDSH FIENNNENNH NLVSVPVIYN EYMRLPCTNN AELQNVGFSQ GGVKSLEVNH  180
LISTRIAESS SKKRKRGRPR KNENVDFGYN ELEERKKIEN KTIAVVCDDV EVQNKKKEEM  240
EMVGKNGVAV DFVALGNMED PYGEELRRRT EGMLGFSQGG VKSLEVNHLI STRIAESSSK  300
KRKRGRPRKN ENVDFGNNEL VERGKIENKT IVVVCDDVEV QNKKKEEMEM VSKNGVVVDF  360
VALGNMEDPY GEELRRRTEG MQLKAEFLGF LEGFEGEWGS TRKKRRIVDA SLFGDALPIG  420
WKLSICVKKQ AGRVWLACTR YISPNGLQFV SCKEVSSYLL SFSGLHDVRR SNFDHMDGRI  480
KLTDKIATSI SADQTCKDGK NENDFISYKA LPVTSTSTET GGCPREVQTG MNYECHKCTL  540
TFDGQDDLLQ HLLSSHQRSP KQLKCGTSTN EEYCTNIIDD LDCSVAGDVR NLACINLNRV  600
PPRLIEELNQ GRGSDSGLLA PNAKENMFND DIIEDRNCSS TIDNMVIDDW DADGKGEPIT  660
GSCAAIAENV AANLKEQRSS EGCSVGLLNS IAVEIMQEKS SKGDLTGIEN NMNSVCTGML  720
NESKFDDVGK PGTNELTSVC RDNNTALVDD NVVINEQGKN HGGCPVIPFL NEQMHLAENN  780
ITGTPKCTIR EPCQEEESEG GLLTISGNEQ SFDLKGNVIK VSKGTINVVN HNEVLCLKNN  840
EFGSEIDQSV QTLTNIQERS SNIFSFFPST NGLTFASKDE QSHDDENSMN QLSCTTSAED  900
KLQEAKTSCN GELCIAFGDN CTEQDADIVT GTVQEICFLF AGNQHTLTAK DNATGPFNGT  960
MDELKQKMDS VESVLCLSGD APMRSVEKNL HTAFTGSIQE EPRVKNTENS KKDDLGHDFS  1020
GHPGPNESVE SEFVWRNEEN GGLRCDFADT CQPVQASGFF PLYDAVSDKG ESEHFGEAYG  1080
VISGFEGLKS GGMENMEYNL LTSQGDLPFL PKNASRHHVP AVCVWCGREI CQEAFESEAQ  1140
TSTMGFMCAE CAARFSGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G164100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456910.10.0uncharacterized protein LOC7486594 isoform X2
TrEMBLA0A3N7F4P10.0A0A3N7F4P1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s17160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719
Representative plantOGRP203579