PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G139700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 328aa    MW: 35941.3 Da    PI: 6.5835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G139700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.5e-15143188555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k Lq
  Potri.005G139700.1 143 HNLSEKRRRSRINEKMKALQNLIPNS-----SKTDKASMLDEAIEYLKLLQ 188
                         9************************8.....7****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.07E-16132192No hitNo description
SuperFamilySSF474598.11E-20135198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-19136198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.714138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-13143188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-17144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGDVYNNETN NINNTCSASS SSRHYHRSSD DISLFLHQIL PRSPSSTSSS SFIGPQTLQP  60
FSVPAPFDDP LRSGVILGVD SSGGGGGALW SGNVRTRLIM SENETDHECD CESEEGLEAL  120
IDEISAKPAP PRSSKRTRAA DVHNLSEKRR RSRINEKMKA LQNLIPNSSK TDKASMLDEA  180
IEYLKLLQLQ VQMLSMRNGT SLHPMFLPGV LQPSQLSQVR MGFDEEIGSK HMNMTTSVPL  240
DGEARLQTML TLPDHCTSSN QASNPIHSET SSGFQSTIQA HFSPFPLRVS SEETWRKDIL  300
PGQQLNGLHQ KIGILDVLLA ATKQRTC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6796156e-60AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079250.11e-103PREDICTED: transcription factor SPATULA-like isoform X1
RefseqXP_012079251.11e-103PREDICTED: transcription factor SPATULA-like isoform X2
SwissprotQ9FUA48e-50SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A067K6S91e-103A0A067K6S9_JATCU; Uncharacterized protein
STRINGPOPTR_0005s18280.19e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-50bHLH family protein