PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G064100.1
Common NamePOPTR_0005s06510g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 196aa    MW: 22267 Da    PI: 4.598
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G064100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.6e-29101271128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGf F+P+deel+ ++L +k++  +++  ++i+++++y  +Pw+L+ ++  +e++wy+Fs+  +        n+at +g+Wk    +++
  Potri.005G064100.1  10 LPPGFIFSPSDEELILHFLDRKASLLPCHP-DIIPDLGLYPQDPWQLEGRALWSENQWYYFSRVME--------NQATGNGFWKPLDIEEP 91 
                         79*************************999.99**************977777899******9865........56899************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+  g++vglkk Lv+     p+g++t+W+m+ey+l
  Potri.005G064100.1  92 IFSSsAGKKVGLKKYLVYC--IGPEGVETNWMMQEYHL 127
                         **9878999*********9..6899***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-389155IPR003441NAC domain
PROSITE profilePS5100537.40310156IPR003441NAC domain
PfamPF023654.4E-1811127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDHGCSGNL PPGFIFSPSD EELILHFLDR KASLLPCHPD IIPDLGLYPQ DPWQLEGRAL  60
WSENQWYYFS RVMENQATGN GFWKPLDIEE PIFSSSAGKK VGLKKYLVYC IGPEGVETNW  120
MMQEYHLCSS KSSGKSYKRK QKLDCSKWIL CRVYQREGSC SRSSNHSDDD DGTELSCLDE  180
MFLSMDDLDD ISFPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-32916216171NO APICAL MERISTEM PROTEIN
1ut4_B5e-32916216171NO APICAL MERISTEM PROTEIN
1ut7_A5e-32916216171NO APICAL MERISTEM PROTEIN
1ut7_B5e-32916216171NO APICAL MERISTEM PROTEIN
3swm_A5e-32916219174NAC domain-containing protein 19
3swm_B5e-32916219174NAC domain-containing protein 19
3swm_C5e-32916219174NAC domain-containing protein 19
3swm_D5e-32916219174NAC domain-containing protein 19
3swp_A5e-32916219174NAC domain-containing protein 19
3swp_B5e-32916219174NAC domain-containing protein 19
3swp_C5e-32916219174NAC domain-containing protein 19
3swp_D5e-32916219174NAC domain-containing protein 19
4dul_A5e-32916216171NAC domain-containing protein 19
4dul_B5e-32916216171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G064100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2861511e-145GU286151.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861521e-145GU286152.1 Populus balsamifera isolate HAY07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861531e-145GU286153.1 Populus balsamifera isolate HAY07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861541e-145GU286154.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861551e-145GU286155.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861561e-145GU286156.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861571e-145GU286157.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861581e-145GU286158.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861591e-145GU286159.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861601e-145GU286160.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861611e-145GU286161.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861621e-145GU286162.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861631e-145GU286163.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861641e-145GU286164.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861661e-145GU286166.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861681e-145GU286168.1 Populus balsamifera isolate GAL12 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861701e-145GU286170.1 Populus balsamifera isolate INU03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861721e-145GU286172.1 Populus balsamifera isolate RNA13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861741e-145GU286174.1 Populus balsamifera isolate STO11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBankGU2861761e-145GU286176.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307034.31e-144NAC domain-containing protein 104
SwissprotQ8GWK63e-65NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2K2ACF61e-142A0A2K2ACF6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06510.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-66xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]