PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G035800.1
Common NamePOPTR_0005s03790g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YC
Protein Properties Length: 251aa    MW: 28071.8 Da    PI: 6.3412
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G035800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.21.6e-55691721101
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+sfw++q   i+k+tdfknh+lPlarikki+kadedv+misaeaPv++s+ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Potri.005G035800.1  69 QLQSFWANQykeIDKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFSRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 159
                         89******999999***************************************************************************** PP

               NF-YC  89 fdflvdivprdel 101
                         fdflvdivpr++l
  Potri.005G035800.1 160 FDFLVDIVPREDL 172
                         **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.55E-3264163IPR009072Histone-fold
PfamPF008082.1E-2191154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-3792169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEQGHGQPPA IVSSTSQLQY GTSPYQPNQM LAASNPGSVT GQPVGAQLAQ HQLAYQQIHQ  60
QQEQQLQQQL QSFWANQYKE IDKVTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFSR  120
ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI  180
PRGTMPVGGP VDALSYCYMP PPHAPQVGAP GMIMGKHVMD PAMYAQQSHP YMAQHMWPQG  240
SEQQQSPSDH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B2e-4084169994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C2e-4084169994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B2e-40841691297NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.89550.0bud| catkin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036760.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011036761.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X2
RefseqXP_011036762.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
RefseqXP_011036763.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1
SwissprotQ8L4B21e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLU5GG470.0U5GG47_POPTR; HEME ACTIVATED protein 5C
STRINGPOPTR_0005s03790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-83nuclear factor Y, subunit C9