PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.005G029000.1
Common NamePOPTR_0005s02870g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 1017aa    MW: 113601 Da    PI: 9.6659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.005G029000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-074682341
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                         W + E e++++a +  G++ Wk++a+++  +R+ +++ 
  Potri.005G029000.1 46 QWKKAELERFYKAYRDNGKN-WKKVAAEVR-NRSVEMVE 82
                        6*****************99.*********.***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00814391IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-74390IPR009057Homeodomain-like
PfamPF002498.9E-64686IPR001005SANT/Myb domain
CDDcd001675.36E-44788No hitNo description
PfamPF065845.9E-33619719IPR033471DIRP domain
SMARTSM011354.1E-59619720IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1017 aa     Download sequence    Send to blast
MAPARKKSVN KRFLNEVSPE KEVKSSGKSK QQVNGKKKLS DKLGPQWKKA ELERFYKAYR  60
DNGKNWKKVA AEVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMID HYSVLEASDS  120
ERESNEMPGV LRKLQKHKRP KVLLSASKED PQHFRMVGST DGCLSLLKRG CGRPLHAVGK  180
RTPRFPVSYL RKKDDGENYV SPKKKRRKLE INADDNDDEH AAVLALTEAL QRVDSPQMSQ  240
TPCRRTENMK SSPVQSWDRM SESSPANLCD ASINENWSES GIGRGGPDLA CVRDASSLAE  300
MEGIGTVEVH RKGKKFYGNK IKVEKIGNSQ SDDGGEACSG TEKEQKASTL KGKVEIEMSN  360
AKIDETFHRS QRKRSKKLFS DDEPADLIGL QTLALVSAME FESSCLLDDE RTTQNGDHKS  420
SIPESASTSH HRDKTKFSRQ KEKATSDVEG ATSRKSKLGR YPQSSAKSVS EANKRPQSIS  480
NDMLKRKREA LVAKVLDEEE NTSVVKGKHS AQISSPSKQL KSLKLPDGSF SGDQKTISND  540
LATSTEQVPV ASQVILPTRK TSRRKMDLKR AMIPKVNVLK NQISKYSISL QDEATHLKDK  600
LSCVVSSPMV RRWCTYEWFY SAVDYPWFSR REFVEYLNHV GLGHIPRLTR VEWGVIRSSL  660
GKPRRFSERF LHEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK  720
TRDLHDGSVL TVDHDRCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEALR RQKTSVLPKE  780
LPVNGKSSIG EFTAIEKLRN AQSPMNALMK QAQVEANHAN LLAKATSTDI VNAQGACGQP  840
SRVSQIQLKK YDIRALSELN CALDKKAISS MKEGEDAFAR IGEALDSMDR SHLGSESRAQ  900
MIRSQEEANT GLGLQNQLIP STPEPQVNCN VSGPQSNDSE KIETAIPSEL ISSCVAALLM  960
IQTCTERQYP PSDVAQIIDS AVTSLHPCCP QNLPIYREIQ MCMGRIKTQI LALIPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190207RKKDDGENYVSPKKKRRK
2201208PKKKRRKL
3202206KKKRR
4202207KKKRRK
5203207KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.005G029000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840860.0AC184086.2 Populus trichocarpa clone Pop1-58C2, complete sequence.
GenBankAC2146880.0AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456949.10.0protein ALWAYS EARLY 2 isoform X1
SwissprotQ6A3330.0ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLA0A2K2AAT80.0A0A2K2AAT8_POPTR; Uncharacterized protein
STRINGXP_002512389.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]