PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G230100.3
Common NamePOPTR_0004s23920g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 508aa    MW: 57769.4 Da    PI: 9.9675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G230100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-131761799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +lp kf++++g++   +   +     g+ We++l  ++++g+++l+kGWkeF++   +  g f+vF+++++ +f  +v +f++
  Potri.004G230100.3  1 MLPQKFVTRYGMD--LTNLAR-LKVLGEAWEIEL--KRCDGKVWLQKGWKEFAEYYSVACGHFLVFEYERNCDF--HVLIFDN 76
                        69********988..433444.44579*******..*********************************99***..****997 PP

2B371.21.3e-22241335198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ +++ps+v++   l++p +fa+++  k++++  +tl  ++gr+W vk++ +++++++++  GWk F+k+n+L +gDf+vF+l++ +e +
  Potri.004G230100.3 241 FKVAMSPSYVHTGYKLSVPSSFARKYFTKNKGN--VTLCVTDGRTWPVKYC-NRTKSGVIFCHGWKAFAKDNKLAVGDFCVFELINVTEMS 328
                         667899********************6555554..7777777********5.55556688999*********************9988888 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         l+v +fr
  Potri.004G230100.3 329 LKVVFFR 335
                         8888887 PP

3B362.19.2e-20412504198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv ++s++l+++ +++p +f+e++ + k    ++++ +   rsW vkli+r ++++ +l++GW +F+++n L++g ++ F+ ++  ++ 
  Potri.004G230100.3 412 FFKVVLRSYYLNRCFVSVPMSFVERYFKHKS---QIVMLQVADRSWPVKLIIRWSQRQAILSAGWARFARENSLQVGHVCAFEIVK--NGM 497
                         99************************75543...5999999*********9999999999***********************765..666 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                         l+v++ r
  Potri.004G230100.3 498 LKVSISR 504
                         7888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.85E-16177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.098177IPR003340B3 DNA binding domain
SMARTSM010190.0022177IPR003340B3 DNA binding domain
CDDcd100172.20E-10175No hitNo description
Gene3DG3DSA:2.40.330.103.8E-17277IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-10276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-28233334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-26234335IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-26239335No hitNo description
PfamPF023621.1E-20241335IPR003340B3 DNA binding domain
SMARTSM010191.6E-20241337IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734241337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-23408505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21409505IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-18412504IPR003340B3 DNA binding domain
SMARTSM010191.1E-18412506IPR003340B3 DNA binding domain
CDDcd100176.60E-20412504No hitNo description
PROSITE profilePS5086314.24412506IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MLPQKFVTRY GMDLTNLARL KVLGEAWEIE LKRCDGKVWL QKGWKEFAEY YSVACGHFLV  60
FEYERNCDFH VLIFDNSATE IDYPLKNNRS EVPGRGLLKE CTKDRGKENN SVEILDHFSP  120
SRRTRKKSPL PCPRPHKMVR TYSTYETGTC SKLSTSVEVP PTGTWSRGMK LESSKTKAKL  180
RCSVRGLDEE DSIRGGRGML MARGQRLSYA GALANMRSLT CYEKAKALCR TSAFKSENPF  240
FKVAMSPSYV HTGYKLSVPS SFARKYFTKN KGNVTLCVTD GRTWPVKYCN RTKSGVIFCH  300
GWKAFAKDNK LAVGDFCVFE LINVTEMSLK VVFFRLKDVE SLLSSDMGGA NQVEPNKSLV  360
AKPQSDWNSR DGAGISNPDD EHKPGEFEHS ESRFEVEPGS KTESKFISTH PFFKVVLRSY  420
YLNRCFVSVP MSFVERYFKH KSQIVMLQVA DRSWPVKLII RWSQRQAILS AGWARFAREN  480
SLQVGHVCAF EIVKNGMLKV SISRSDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A6e-2020950617144B3 domain-containing transcription factor VRN1
4i1k_B6e-2020950617144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127RRTRKKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G230100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454891.10.0B3 domain-containing transcription factor VRN1 isoform X5
TrEMBLA0A2K2AZ200.0A0A2K2AZ20_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23920.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-41B3 family protein