PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G227600.2
Common NamePOPTR_0004s23620g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 680aa    MW: 78035.7 Da    PI: 7.8677
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G227600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.6e-2163156190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k +     +w+vt ++++HnH
  Potri.004G227600.2  63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSNENKPQRNRKSSRCGCQAYMRISKVTelgAPEWRVTGFDNHHNH 153
                         6**************9998877356667999***************999*********************998887889************ PP

                FAR1  88 ela 90 
                         el 
  Potri.004G227600.2 154 ELL 156
                         *96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1863156IPR004330FAR1 DNA binding domain
PfamPF105511.2E-18279370IPR018289MULE transposase domain
PROSITE profilePS509669.755557590IPR007527Zinc finger, SWIM-type
PfamPF044344.7E-7561588IPR007527Zinc finger, SWIM-type
SMARTSM005758.7E-6565592IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MMSEEAGQML VVYDDPSDQR SLSLDDTSSA EESPDETRLS LETPNDAIPY IGQRFATHDE  60
GYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSN ENKPQRNRKS  120
SRCGCQAYMR ISKVTELGAP EWRVTGFDNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESV DLLRMCRNIK  240
EKDPNFKFEY TLDSDNRLEN IAWSYASSVQ SYEIFGDAVV FDTTHRLTAF DLPLGIWVGM  300
NNYGMPCFFG CVISREENLR SLSWALKAFL GFMNGKAPQT ILTDQNMCLK DAIAKEMPST  360
KHALCIWMIV AKFPSWFNAV LGERYNEWKA EFYRLYNLES IEDFEQGWRD MVNIFGLHTN  420
RHVANLHALR NLWALPYLRS HFFAGMTAAG HSKSINAFIQ RFLSAQTRLA HFVEQVAVAV  480
DFKDQAAEQQ TMQQNLQNIS LKTGAPMESH AATVLTPYAF SKLQEQLVLA AHYASFQMED  540
GFHVRHHTKR EGGRIVYWVP REGIISCSCN QFEFSGILCR HALRVLSTGN CFQIPERYLP  600
LRWRRINTSS AKLLHSSNDH GERIQLLQNM VSSLITESAK SKERLDIATE QVSILLSRIR  660
DQPVPSQGIR DFTSIHRKL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G227600.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385070.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_024455672.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLB9N0G80.0B9N0G8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]