PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G217100.1
Common NamePOPTR_0004s22670g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 407aa    MW: 45330.1 Da    PI: 8.2953
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G217100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07232254123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  Potri.004G217100.1 232 HYCQVCGKGFKRDANLRMHMRAH 254
                         68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-6230258No hitNo description
SMARTSM003550.0034232254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653232259IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-6232258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
SMARTSM0035590289322IPR015880Zinc finger, C2H2-like
SMARTSM0035530327349IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MISGDSSCFP SASSQGLHMY QAVTEDVVSS TLEASSSSEA HSNSLLYNLS LLKDKVHQVE  60
SLISILIAPD HSQPNDHKST SVALANMSTM IQEIIVAASS VMFTCQQMGI GNDISGNNIN  120
TNDLHQPRGR KAEESSLLSQ PNFGGNHAGN IGQERGQSFF SPESFDWCSD NYNDNCNTNE  180
NIRGIHVSSN NRVDIRREIL SQGGEGILQG QSPKNYDIIE LDAADLLAKY THYCQVCGKG  240
FKRDANLRMH MRAHGDEYKT TAALSNPMKN NPTATPENKE ASMKLPRKYS CPHEGCRWNR  300
KHAKFQPLKS MICVKNHYKR SHCPKMYVCK RCSRKQFSVL SDLRTHEKHC GDLKWLCSCG  360
TTFSRKDKLM GHVALFFGHT PAISGLTRPT KFENQTMQMH LDHDRG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G217100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384968.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-114STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLU5GGZ90.0U5GGZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-107C2H2 family protein