PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G209000.1
Common NamePOPTR_0004s21880g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 790aa    MW: 90574.9 Da    PI: 6.8171
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G209000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.43.7e-3182173291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v++++  HnHel+
  Potri.004G209000.1  82 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKASLSVKMQDSGKWVVSSFVRGHNHELV 172
                         9***************************************998888545677889***********************************8 PP

                FAR1  91 p 91 
                         p
  Potri.004G209000.1 173 P 173
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2982173IPR004330FAR1 DNA binding domain
PfamPF105514.8E-33294386IPR018289MULE transposase domain
PfamPF044344.3E-12562608IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.905574610IPR007527Zinc finger, SWIM-type
SMARTSM005759.9E-9585612IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MENEVLEFDI GLGSGADDDD DDDAVDIDID DDLPSTPPHH LTTSHNSAST SATRIYLPEG  60
DLSDLEPYEG MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF  120
RNLNEKRTKD REIKRPRVIT RVGCKASLSV KMQDSGKWVV SSFVRGHNHE LVPPDQVHCL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRNNRQRSM  240
EGDIQLLLDY LRQMQSENPD FFYALQGDDG QFTGNVLWAD PRARANYSYF GDTVTFDTTY  300
RSNRYRLPFA PFTGVNHHGQ PVLFGCAFIL NETEASFVWL FQTWLTAMSG RHPLSITTDH  360
DAVIRLAIMQ VFPETRHRFC KWHIFKKCQE KLSHVLLKHP TFESEFHKCV NLTELIEEFE  420
SCWLSLVDRY ELRDHEWLQT IYSDRRQWVP VYLRDAFFAE MSITQRSDSM NSYFDGYVNA  480
STNLNHFFKL YERAIESRNE KEVKADYDTM NTNPVLKTPS PMEKQASGLY TRKLFVRFQE  540
ELVGTLTFMA SKSEDDGESI TYQVAKYGED HKAYHVKFNV LEMKATCSCQ MFEFSGLLCR  600
HVLTVFRVTN VLTLPSRYIL KRWTRNAKSN VILEERPTDV YTGYLESHTV RYNTLRHEAF  660
KFVEEGSKSL DTYNVAMGVL QEATTRVAQA TKNEGRAGDV NGRNKGDSAS SGIRANYTSG  720
NHLGISGQPL SEEDMDKKIQ ELRDELEYAN RKCEVYRANL LSVLKDIEDH KQQLSIKVQS  780
IKISMKGSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.54210.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G209000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384877.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLU5GKF10.0U5GKF1_POPTR; Uncharacterized protein
STRINGPOPTR_0004s21880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]