PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G205500.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Nin-like
Protein Properties Length: 664aa    MW: 74404.6 Da    PI: 6.277
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G205500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.64.4e-07614650231
              RWP-RK   2 ekeisledlskyFslpikdAAkeLg.......vclTv 31 
                         ek+isle+l+++F++++kdAAk++g       ++ T+
  Potri.004G205500.2 614 EKTISLEVLRQHFAGSLKDAAKSIGgrrlfttIGNTI 650
                         79**********************9888888888776 PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MDDGNGPNFI PDSAFENFSG SSMDLDFMDD LLYEGCWLET ADEFNFLQAG TISSSDLNDP  60
RQYFPLFEPN SSNSNVNSHQ ENYQGVDELG GIGSQNQNIR SLDQSGSFPV ESNELGRRLW  120
IAPTATGPSS PVRDRLMHAI GQVKECTKDR DVLIQIWVPV KKEGKNVLTT IGQPYLLDRK  180
CQSLASYRNV SKDFQFPADE DSKELVGLPG RVFLRELPEW TPDVRFFSGV EYLRKNHAKQ  240
FNIRGSLAVP VFEQGSRTCL GVIEVVTTTR DISYRPDLEN VCKALEAVDL RSPQDFCPPS  300
LKVCKEVCQA AAPEISKILE SVCKAHRLPL ALAWAPCFRE GKGGCRHFDE SYSYFISLVN  360
SAYFVAERDD WGFYMACSEQ YLSFGHGIVG RAFATNKQCL STDVAAFSKT DYPLSHHAKM  420
FGLHAAIAIP LQSSYAGSAD FVLELFLPKD CRNTEEQKQM WDILPITVQQ ACQSWHVIMD  480
KELEETVNKK MVVASDERFH KDESQKFASS LFKDSSKAES SWIARTVEAQ QKGKGVSVSW  540
DHTKEEPREE FKVKSQWGRT QDDTYHKQAF PAFGQFQQNS GPKSSIEAGT DSSSAGRHSL  600
GSIKFGDKRR TKTEKTISLE VLRQHFAGSL KDAAKSIGGR RLFTTIGNTI FFFHCLIQVN  660
ITH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G205500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455016.10.0protein NLP2 isoform X1
RefseqXP_024455017.10.0protein NLP2 isoform X1
RefseqXP_024455018.10.0protein NLP2 isoform X1
TrEMBLU5GKC20.0U5GKC2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s21550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein