PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G196300.3
Common NamePOPTR_0004s20710g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 884aa    MW: 99461.9 Da    PI: 6.6479
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G196300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.44.1e-1762134288
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                         fY+eYA+++GFs+ +++ ++ k++g +  r+fvC +eg ++++  +              C+a+l++++++ gkw+vt++++eHnH+
  Potri.004G196300.3  62 FYDEYARRLGFSTNVAHFTRPKTDGAMAAREFVCGREGLKRRSAYS--------------CHAMLRIELKSPGKWVVTHFVKEHNHS 134
                         9**************************************9987665..............**************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-1462134IPR004330FAR1 DNA binding domain
PfamPF105514.2E-26282374IPR018289MULE transposase domain
PROSITE profilePS5096611.078560596IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-10566594IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MDVHVIDGEE GMGHRGVAYD GDSEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDEYARRL GFSTNVAHFT RPKTDGAMAA REFVCGREGL KRRSAYSCHA MLRIELKSPG  120
KWVVTHFVKE HNHSTTSLRK VKYLRPRRHF AGAAKSVAET GQGVGVAPSG VGVVPSGVMY  180
LSMDGNHTPV AETNHGVRNT PPAEPNRVIK TSTTVNYIGR PNNQKRTLGR DAQNLLEYFK  240
KMQAENPGFF YAIQLDDENR MANVFWADAR SRTAYTHFGD AVTFDTNSRV NQYRVPFAPF  300
TGLNHHGQTI LFGCAILLDD SEASFVWLFK TFLTAMYDQQ PASIITNRDR AIQTAVSQVF  360
PDARHCNCKW HVLREGQEKL AHVCNAHPNF QLELYNCINL TETIEEFESS WRDILDKYDL  420
RGHEWLQSLY DARTQWVPVY FRDSFFAVMS PNQGFDGSFF DSYVNQQTTL PMFCRQYERA  480
LDNWFERELE ADFDTICTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE  540
GDAAISTFRV AKFEDDQRAY IVSLNYPEMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL  600
PPHYILKRWT RNAKISTGMD DHGGDLPGQE SLTLRYNNLC REAIKYAEEG AIAAETYNVA  660
MVALREGGKR VAVVKKNVAK VSPPGAGNDD RKTSTSASDT TPLLWPPQDE VTRRFNLNDT  720
STPVQSVADL NLPRMAPVSL QRDDGPPGNM AVLPCLKSMT WVMENRSSTT GNRVAVINLK  780
LQDYGKTPST ELEVKFQLSR VTLEPMLRSM AYISEQLSTP ANRVAVISLK LQDTETSTGE  840
SEVKFQVSRD TLGAMLRSMA YIREQLSNSA EPQAEPPSKK HRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.105310.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G196300.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384743.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3N7EYI60.0A0A3N7EYI6_POPTR; Uncharacterized protein
STRINGPOPTR_0004s20710.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]