PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G188800.1
Common NamePOPTR_0004s20020g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 280aa    MW: 30160.9 Da    PI: 4.4555
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G188800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00072253276123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ C +sF +   Lk+H +  H
  Potri.004G188800.1 253 FSCKSCERSFGSDGALKSHSQAkH 276
                         89*****************76655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.512253279IPR007087Zinc finger, C2H2
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSMEFWGVE VKAGEPLKVE PKDFYMIHLS QAALGESSKK GNESVPLFLK LDEKKLVLGT  60
LSPDKIPQLS FDLVFEREFE LSHNWKNGSV FFCGYQAAIP ENDSDFSDDG DEIPFEKVEN  120
VKFATGTDKA AKPEKPKANP VVPSKDDESD DDDSDDDSDE DDSGDGSEGM SLEEDLDDES  180
DSEDEETPKK AEQSKKRTSD SAIKTPVSSK KAKTATPQKT DGGKAGQVTP HPAKGKAASN  240
GNNPKTPKSG GNFSCKSCER SFGSDGALKS HSQAKHGDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.166450.0bud| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G188800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1446810.0EF144681.1 Populus trichocarpa clone WS01116_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384671.10.0histone deacetylase HDT1
TrEMBLA9P9500.0A9P950_POPTR; C2H2 family protein
STRINGPOPTR_0004s20020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-35histone deacetylase 3
Publications ? help Back to Top
  1. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]