PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G175200.1
Common NamePOPTR_0004s18120g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 267aa    MW: 29077.5 Da    PI: 6.4995
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G175200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.2e-1184133351
                         XXCHHHCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqk.NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                          +k+ +++ + NReA r++R+RKka+ + Le++vk L a N++L k+l+ 
  Potri.004G175200.1  84 TDKKSKKRSSgNREAVRKYRERKKAKAASLEDEVKHLRALNQQLLKRLQG 133
                         66777777666**********************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.4E-1481151No hitNo description
SMARTSM003381.0E-1082150IPR004827Basic-leucine zipper domain
PfamPF077162.2E-1484140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.51985132IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.42E-787133No hitNo description
CDDcd146864.86E-1295142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDDGELDFSN QDLLSSPNIG EIPSSCSFDF LDELLKDTHA CTHTHTCNPP GPDYSHTHTC  60
YHVHTKILPP AEDKVVSDDT AESTDKKSKK RSSGNREAVR KYRERKKAKA ASLEDEVKHL  120
RALNQQLLKR LQGQAALEAE VARLKCLLVD IRGRIEGEIG SFPYQKSANN VNLANPNIPG  180
SLVMNPCNIQ CDGQIYCQRP VLDSKGGEGA PLNGQGFSSC ELENLQCMEY QNSGMIGLSG  240
CSLGNEATNG NSSSTNKRKK GIVEQV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G175200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384577.20.0basic leucine zipper 19 isoform X1
SwissprotQ8VY761e-103BZP19_ARATH; Basic leucine zipper 19
TrEMBLA0A2K2AW840.0A0A2K2AW84_POPTR; Uncharacterized protein
STRINGPOPTR_0004s18120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25673277
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35040.12e-91bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Henriques AR,Farias DDR,Costa de Oliveira A
    Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.
    Genet. Mol. Res., 2017.
    [PMID:28671251]
  4. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]