PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G141900.1
Common NamePOPTR_0004s14910g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 194aa    MW: 21803.4 Da    PI: 8.6075
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G141900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-1519108299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +k ++ps+v+   +l lp+kf+  h  + + +  ++l de+ ++++v +i ++++    l++GW++F  +++L e D++vF+l++    +l
  Potri.004G141900.1  19 VKPMLPSHVSGGFWLGLPRKFCHLHL-P-NHDAIIILVDETEKEYQVVHIAERTG----LSGGWRGFSIEHRLLEQDTLVFQLIEP--DKL 101
                         6999******************6663.3.45678***************666666....***********************9974..445 PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         ++ ++r+
  Potri.004G141900.1 102 KIYIVRA 108
                         7777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2014111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1618109IPR015300DNA-binding pseudobarrel domain
CDDcd100177.07E-2218107No hitNo description
PROSITE profilePS5086310.70118109IPR003340B3 DNA binding domain
SMARTSM010191.1E-1918109IPR003340B3 DNA binding domain
PfamPF023623.3E-1319108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MERAEEIQAY LGNKFLTCVK PMLPSHVSGG FWLGLPRKFC HLHLPNHDAI IILVDETEKE  60
YQVVHIAERT GLSGGWRGFS IEHRLLEQDT LVFQLIEPDK LKIYIVRANR LSETDGALGL  120
MHLSHAKRTD FGKQRASRSA RMLPLSLKML AKIDICLSLG CLQFCPLNHS NKGQIDGSSA  180
VVFSNLIYQR CFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G141900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384420.21e-143B3 domain-containing protein At3g19184 isoform X1
SwissprotQ1G3M35e-38Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2K2AUJ01e-142A0A2K2AUJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14910.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2714522
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-40B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]