PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G078800.1
Common NamePOPTR_0004s07700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 670aa    MW: 73684.8 Da    PI: 6.3336
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G078800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.51.7e-1082936692374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++++e+A a+ +g++   +++L+r+s  +sp g++ qRl+ y++ AL++rl++s ++     ++ e     s+e++ a++l++++sP++k
  Potri.004G078800.1 293 KQTVIEAASAIYEGKTDVYTEILTRVSLVSSPGGNSEQRLIEYMLMALKSRLNSSENT----TSVMEL---YSKEHVDATQLLYDLSPCFK 376
                         57899************************************************92222....222233...388999************** PP

                GRAS  93 fshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg.skeeleetgerLakfAeelg 173
                         +++++aN aI +a+ ++        +  H++Dfdi++G+Q+ +Ll+aL+  ++++p+ ++iT+v++ ++g ++e+l+ +ge L+++A+++g
  Potri.004G078800.1 377 LGFMAANLAIIDATREQeqeantssNGFHVVDFDIGHGGQYKNLLHALSgLQNSKPAIVKITAVAADSNGvEEERLRLVGETLTQLARRVG 467
                         *************988766555444456*********************66668888*********99999******************** PP

                GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                         +++ fnv v+ +l++l+ e+L ++p+EalaVn++++l+r++desvs+++ +rde+L+ vk+l P+vv+vveqe+++n+++F++r+ e+++y
  Potri.004G078800.1 468 LNLCFNV-VSCKLSELTRESLGCEPDEALAVNFAFKLYRMPDESVSSTEnPRDELLRRVKGLAPRVVTVVEQEMNTNTAPFMARVNESCSY 557
                         ******9.7999********************************987766***************************************** PP

                GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve 352
                         y alfds+e+++  +++er+kvE+  lgr+ vn vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++k+ l+  +  + g++v+
  Potri.004G078800.1 558 YGALFDSIESTVKGDNSERAKVEEG-LGRRMVNSVACEGRDRVERCEVFGKWRARMGMAGFELKPLSHNIAESMKTRLSLANrvNPGFSVK 647
                         *************************.***************************************************9999887889**** PP

                GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                         ee+g +++gW++++L+++SaWr
  Potri.004G078800.1 648 EENGGVCFGWMGKTLTVASAWR 669
                         *********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.338266647IPR005202Transcription factor GRAS
PfamPF035145.8E-106293669IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MASGFSGGGG GGGGGVQDFY TNRSPIIPTM NLTNNHHNPS SLPPYRTNQI FLDQNLSSHN  60
YQQIAQHRAI FPTTTATTTL IGKRTLADFQ AFQQSPPQQN LLNQAALNNL LLRSVKPRIN  120
NNIFQQNTSP ISTLDFSVSN LSPELPSLMS QRYGLPLLQQ LRPQHHQQHQ QQQPMNLISP  180
IGIINNNRSS NNSMMPYVNM LQNQNGGGNG IVMGQDREKK MLNQLQELEK QLLDDDDDNQ  240
EGDAVSVITN TNSEWSETIH NLITSSSCNN PISPSPTSSS SSSFSTVTTP VSKQTVIEAA  300
SAIYEGKTDV YTEILTRVSL VSSPGGNSEQ RLIEYMLMAL KSRLNSSENT TSVMELYSKE  360
HVDATQLLYD LSPCFKLGFM AANLAIIDAT REQEQEANTS SNGFHVVDFD IGHGGQYKNL  420
LHALSGLQNS KPAIVKITAV AADSNGVEEE RLRLVGETLT QLARRVGLNL CFNVVSCKLS  480
ELTRESLGCE PDEALAVNFA FKLYRMPDES VSSTENPRDE LLRRVKGLAP RVVTVVEQEM  540
NTNTAPFMAR VNESCSYYGA LFDSIESTVK GDNSERAKVE EGLGRRMVNS VACEGRDRVE  600
RCEVFGKWRA RMGMAGFELK PLSHNIAESM KTRLSLANRV NPGFSVKEEN GGVCFGWMGK  660
TLTVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3731566926375GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.126480.0bud| catkin| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469220.0EF146922.1 Populus trichocarpa clone WS01223_P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305914.10.0hypothetical protein POPTR_0004s07700g
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLB9H3H70.0B9H3H7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7599918
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-164SCARECROW-like 8