PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G070500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 708aa    MW: 81915.7 Da    PI: 6.5471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G070500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS187.58.8e-5883634374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          L++cA+a+++gdl+ a++l + ++ l++ +  + +++++ yf+eALa+r+++     ++  +p +        + +  k+ +e sP+  f
  Potri.004G070500.1   8 KLMDCAKAIADGDLKFADQLFSDMEALSAAETnRVTKKVVDYFAEALARRVHG-----VHPRNPFP-----LLPSSNLKKISYEPSPLEWF 88 
                         79*************************55555399******************.....33333333.....334445566779******** PP

                GRAS  94 shltaNqaIleavege.ervHiiDfd.isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         + + +  aI + ++ + +++H i ++ +  + Q  +L + L    +g p s++ T + ++ s++ + l+e ++ ++++A++  v+f++++l
  Potri.004G070500.1  89 ACMSTDYAIRDVLNVKkNKLHLIEISsLVDCWQRHSLEEYLLHGHHGMPlSFQYTSIRPKLSKNDDYLQENRRMITEVAQRSPVDFKYRAL 179
                         *************9886999*****73679***********998877777*********9999**************************** PP

                GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          a+++ d+  + Lr+++   +E ++V +v+qlh+ll    +le + d+vL+ +k+l+P+++v+veqead n+ +F+ rf+++++yy  lf+
  Potri.004G070500.1 180 FADSVPDIVESVLRLERtseDEIIIVRWVFQLHKLL----ALEGAVDKVLSKLKDLKPDIMVIVEQEADNNTDDFFYRFASSFKYYLNLFE 266
                         ********999998877778***************9....55555666******************************************* PP

                GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                         sle    +++      Er+ l+++i+nvva eg +r+erhetl++W++rl  a F +v+l ++  ++    l  ++   y++ee+sg  vl
  Potri.004G070500.1 267 SLELY--ATNLSSLIWERH-LRWQICNVVASEGIDRIERHETLARWQQRLYGARFCSVSLCSDHFADF---LYDFS--AYKIEENSGFPVL 349
                         **998..689999999*99.****************************************99988775...44444..699********** PP

                GRAS 361 gWkdrpLvsvSaWr 374
                            ++pL+++S+W+
  Potri.004G070500.1 350 LAAGHPLIFASVWK 363
                         *************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.6231348IPR005202Transcription factor GRAS
PfamPF035143.0E-558363IPR005202Transcription factor GRAS
PROSITE profilePS5060014.118483662IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540011.2E-32507689No hitNo description
PfamPF029022.2E-19511688IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1303.1E-13564657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MGSPLVIKLM DCAKAIADGD LKFADQLFSD MEALSAAETN RVTKKVVDYF AEALARRVHG  60
VHPRNPFPLL PSSNLKKISY EPSPLEWFAC MSTDYAIRDV LNVKKNKLHL IEISSLVDCW  120
QRHSLEEYLL HGHHGMPLSF QYTSIRPKLS KNDDYLQENR RMITEVAQRS PVDFKYRALF  180
ADSVPDIVES VLRLERTSED EIIIVRWVFQ LHKLLALEGA VDKVLSKLKD LKPDIMVIVE  240
QEADNNTDDF FYRFASSFKY YLNLFESLEL YATNLSSLIW ERHLRWQICN VVASEGIDRI  300
ERHETLARWQ QRLYGARFCS VSLCSDHFAD FLYDFSAYKI EENSGFPVLL AAGHPLIFAS  360
VWKPANATHS SGENIGNSDD TMRGTDLNHP ITILEESTSP VVEPEAVSSS EFTEPEVVSS  420
SESDDDNEYV YNRIRRSMHG KIWSVQEVRE YLVSPFTEKE SKRLSRWKSR KLTRNVAGRD  480
KQLNVPDTSL ASLLRIPPSS TPICEEKQYY VDDSVINAFF DLLKKRQEKF PDWYKRNSSL  540
PTWTMTFLLS GKWTMTKLLS CINIEEIAGT AKLFIPLCLE NHWILICVDM EKREFLWLDS  600
LNSPPDAHHT EKTTISEWLE KHLLPVLGYR NSQQLKLKQL NIPYQTNRID CGIFVMKYAD  660
CLAHCDHFPF TQEDMPHFRL RVFLDIYRGR LPVPPSHVRF LRALYNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1533632375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483370.0EF148337.1 Populus trichocarpa x Populus deltoides clone WS01313_H03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035375.10.0PREDICTED: DELLA protein GAIP-like isoform X3
TrEMBLB9H3N90.0B9H3N9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2806323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.18e-54GRAS family protein