PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G065800.1
Common NamePOPTR_0004s06440g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 474aa    MW: 51750.4 Da    PI: 8.1988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G065800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.7e-39792372133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssss 69 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a+ ai el+ +                       +++s
  Potri.004G065800.1  79 SGGKDRHSKVWTSQGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAQDAINELPPLnhsfpdtpkqlsdekrtsdgteqGFDS 169
                         689*************************************************************999998888888877777666654444 PP

                 TCP  70 asec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                         a ++     + ++s++++++ s +k+a s++++ ++ +  + a++  ++sr kar+rarert++++ ++
  Potri.004G065800.1 170 A-DVelndpNFSQSQNQNQHLSLSKSACSSTSETSKGSGLSLARSGIRDSRVKARERARERTAKEKEND 237
                         4.2222211333344444433333444444444444444444455555999*********999998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-4480235IPR005333Transcription factor, TCP
PROSITE profilePS5136932.25181139IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.57216234IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEAEEIQRQP CKFSRVGNGR NDSSRIAQNG YGDHQYPDEE EDGGVKRSNP NNGGGAGGTI  60
NRLREWHHSS RIIRVSRASG GKDRHSKVWT SQGLRDRRVR LSVTTAIQFY DLQDRLGYDQ  120
PSKAVEWLIK AAQDAINELP PLNHSFPDTP KQLSDEKRTS DGTEQGFDSA DVELNDPNFS  180
QSQNQNQHLS LSKSACSSTS ETSKGSGLSL ARSGIRDSRV KARERARERT AKEKENDSRI  240
AHHHNINPIS QNSTFTELLT GGIGSVSNNN NSNSSSSNNN NAASPSEANL FQKAAAARQW  300
LSTPMDYIST GLLGPSSSRT THHSSGFPGQ IQLGNSIPQP MTMSVPPFNV SGENHQEQLQ  360
HFPFISDHLM PVAATTQTVG DYNLNFTISS SLAAGFNRGT LQSNSSSPSL FSHLQRFSTS  420
SPIDGSTTNV PFLIGAPQQA MENHHHQHQF PHGLQLCYGD GTRHSDQKGK GKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2486140155Putative transcription factor PCF6
5zkt_B7e-2486140155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G065800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305700.20.0transcription factor TCP2
RefseqXP_024455006.10.0transcription factor TCP2
RefseqXP_024455007.10.0transcription factor TCP2
TrEMBLB9H2A90.0B9H2A9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s06440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2