PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G056900.1
Common NamePOPTR_0004s05580g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 160aa    MW: 17736 Da    PI: 9.2865
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G056900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383997260
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                        +ek ++cprC+s++tkfCy+nny+++qPryfCk+C+ryWt+GGalrnvPvG+grrk k 
  Potri.004G056900.1 39 PEKVIPCPRCKSMETKFCYFNNYNVNQPRYFCKGCQRYWTAGGALRNVPVGAGRRKTKP 97
                        68899***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-283896IPR003851Zinc finger, Dof-type
PfamPF027017.0E-324196IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.1924397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010214Biological Processseed coat development
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASQEEGIKL FGATITLHDK QEGNKEDPNK ENPTTDKRPE KVIPCPRCKS METKFCYFNN  60
YNVNQPRYFC KGCQRYWTAG GALRNVPVGA GRRKTKPPGR VGLDGYSEGC LYDGSGGVHR  120
FELDGMVLEE WHLATTHGSS RHVFPVKRRR SGGSGGHTC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.42260.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Acts as a negative regulator in the phytochrome-mediated light responses. Controls phyB-mediated end-of-day response and the phyA-mediated anthocyanin accumulation. Not involved in direct flowering time regulation. {ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00166DAPTransfer from AT1G29160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G056900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By red or far-red light. Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305070.11e-117dof zinc finger protein DOF1.5
SwissprotP683509e-60DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLB9H2I31e-116B9H2I3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s05580.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64833251
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.14e-62Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Bueso E, et al.
    Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration.
    Plant J., 2016. 87(6): p. 583-96
    [PMID:27227784]