PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.004G047600.1
Common NamePOPTR_0004s04720g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 210aa    MW: 22925.8 Da    PI: 9.4026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.004G047600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-202877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdps+   + r++lg+f+taeeAa+a++ a+++++g
  Potri.004G047600.1 28 HFRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDTAAREFRG 77
                        69*******.**********965...6************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-402891IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-222886IPR016177DNA-binding domain
PfamPF008473.0E-132877IPR001471AP2/ERF domain
CDDcd000185.21E-332886No hitNo description
Gene3DG3DSA:3.30.730.101.6E-322885IPR001471AP2/ERF domain
PROSITE profilePS5103223.962885IPR001471AP2/ERF domain
PRINTSPR003674.0E-112940IPR001471AP2/ERF domain
PRINTSPR003674.0E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MAPREKTAAV KASGGGIVGG GGGGKEVHFR GVRKRPWGRY AAEIRDPSKK SRVWLGTFDT  60
AEEAARAYDT AAREFRGSKA KTNFPYPSCE NVKKNSPSQS STVEFCSSDA PLDLNLGPAV  120
STVRLPFQPM AMNQQQVVYF DAFMKSQYRR MVFDHGYHHH PNQPVIFSCG GVLSDSDSSS  180
VVDLNHQDVK TPRRSVDLDL NLPPPPEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-222585263ATERF1
3gcc_A8e-222585263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.8000.0bud| catkin
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.004G047600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305121.31e-129LOW QUALITY PROTEIN: ethylene-responsive transcription factor 4
SwissprotQ9LW493e-44ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A2K1YG082e-92A0A2K1YG08_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04720.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-28erf domain protein 9