PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G200000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 347aa    MW: 38622.8 Da    PI: 7.1302
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G200000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1476163186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ +++s+k   qCk++++ ++k+yk +k+   ++  +  s +p+fd l+
  Potri.003G200000.1  76 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsSREDYSKSSKidiQCKNRIDTVKKKYKLEKAKIASG--GGPSGWPFFDPLD 163
                         7*************************************87788988875555*********************98..56667*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-2474165No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEDDDEIQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP VPPPPQQNNK NRLALVLPTK  60
PKVNGGGGGG GGREDCWSEG ATAVLIDAWG ERYLELSRGN LKQKHWKEVA EIVSSREDYS  120
KSSKIDIQCK NRIDTVKKKY KLEKAKIASG GGPSGWPFFD PLDRLIGSTA RIPVVGNGNV  180
GGKIPTRVRS GSRRGGVNQY HFRNQNVKIR ILKHEEDEDD EEEGEEEEGG AESDDSFPPM  240
KKRRVVVERE DVTQAMVKFG EAYEQAESAK LQQVVEMEKT RMEFVKELEL QRMQFFMQTQ  300
MGISQLKNAR RGGNATSNHY HHQYHRHHTG NNINASNNVN NSDSDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020370.11e-169PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG81e-84ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLB9GWM51e-162B9GWM5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19840.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-51sequence-specific DNA binding transcription factors