PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G195300.2
Common NamePOPTR_0003s19470g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 326aa    MW: 35600.5 Da    PI: 10.2462
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G195300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.88.8e-1154116159
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnk 59 
                         +W++  v +L+ea+++++   +r+klk+++We+v+ ++      ++  ++++qCk+k+e+++k
  Potri.003G195300.2  54 EWSEGAVSTLLEAYENKWILRNRAKLKGHDWEDVAHHVssraNCTKSPKTQTQCKNKIESMKK 116
                         5*************************************854444555566679*******998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-1352117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDKETNRESP SLLPSNTTTI KEESPRKLLG GTGAAGVVVS GGGGGGGDRL KRDEWSEGAV  60
STLLEAYENK WILRNRAKLK GHDWEDVAHH VSSRANCTKS PKTQTQCKNK IESMKKSATA  120
AVTPSPQVPP QHQQPSIPTS ANPPLMLLMD QSPLAVTQPP APAPPPPPLP PPLPHQTIGT  180
AQNSHGSNGV DRGAKGDGMD TKLSDHVSDK NAMDTDSSTP ALYSDKEKLR SKKLKKKMEK  240
RKRRKREEWE MADSIRWLAE VVVRSEQARM DTMRELEKMR IEAEAKRGEM DLKRTEIIAN  300
TQLEIAKLFA GVGRGVDSSL RIGKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244KRKRRK
2239245KRKRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2255731e-111CU225573.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303935.20.0hypothetical protein POPTR_0003s19470g
TrEMBLB9GWZ50.0B9GWZ5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.17e-79sequence-specific DNA binding transcription factors