PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G192000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 303aa    MW: 33026.5 Da    PI: 6.8697
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G192000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05110132123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C++ Fs++  L  H++ H
  Potri.003G192000.1 110 FSCSYCKREFSTSQALGGHQNAH 132
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-6107137No hitNo description
Gene3DG3DSA:3.30.160.607.4E-4108136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-6109134IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.739110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MESIGAERCP SRTSSISAAS EETLCRHSGD HDQKNMINLK MKEKVVSGTE PLTLPDSSSS  60
PVLLDLKLSN DDSLGGSKLE FNLFSPINAG SFHANESIDE TLKLADSRVF SCSYCKREFS  120
TSQALGGHQN AHKQERAIAK RRQGMDVDAF GHFPYYPCSN PSTHPYYGSF NRSLGMEMDS  180
LIRKPSSYPW STSSSGYRFG LGGWSRQAMM NAQPTSIDRL RMESLNSLNG RYGNSTASSS  240
SSSSSSSRFE DINDLFRNFG GSSSSNIATN KPSNIDTDQL QLIEPPKSDQ ANPLGLDLSL  300
KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G192000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453910.10.0zinc finger protein 1
TrEMBLA0A2K2B9H90.0A0A2K2B9H9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s19120.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-19zinc finger protein 3