PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G185300.1
Common NamePOPTR_0003s18350g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 352aa    MW: 39711.8 Da    PI: 7.61
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G185300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-144099155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e A  a++ a++k++g
  Potri.003G185300.1 40 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAGHAYDLAALKYWG 99
                        57*******************999955656446**********9999***********98 PP

2AP251.33e-16142193155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Potri.003G185300.1 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 193
                         89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-104099IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1640109IPR016177DNA-binding domain
CDDcd000187.53E-1840109No hitNo description
Gene3DG3DSA:3.30.730.102.2E-1541108IPR001471AP2/ERF domain
SMARTSM003805.0E-2541113IPR001471AP2/ERF domain
PROSITE profilePS5103219.65141107IPR001471AP2/ERF domain
PRINTSPR003673.9E-64253IPR001471AP2/ERF domain
PfamPF008475.5E-12142193IPR001471AP2/ERF domain
CDDcd000183.18E-23142203No hitNo description
SuperFamilySSF541719.81E-18142203IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17143202IPR001471AP2/ERF domain
PROSITE profilePS5103218.334143201IPR001471AP2/ERF domain
SMARTSM003801.0E-24143207IPR001471AP2/ERF domain
PRINTSPR003673.9E-6183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKTSKQSLK NSANTSINPA TKVKRTRKSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD  60
KNCWNESQNK KGRQVYLGAY DDEEAAGHAY DLAALKYWGQ DTILNFPLST YEEEFKEMEG  120
HSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
ATAYDMAAIE YRGLNAVTNF DLSRYVKWLR PNNQNNINNP QQNPNGDANI PIQNLDQKLE  240
LDFISHQQSS KVNDTEVAPT RPCGAGGSAS SALGLLLQSS KFKEMLERTS ASDCPLTPPE  300
SDRDPPRRSF PDDIQTYFDC QDSSSYTDGD DIIFGDLHSF ASPIFHCELD G*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G185300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103840.0AC210384.1 Populus trichocarpa clone POP028-N07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448435.10.0AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_024452992.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-123AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2K2B9730.0A0A2K2B973_POPTR; Uncharacterized protein
STRINGPOPTR_0003s18350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-98ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]