PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G180600.1
Common NamePOPTR_0003s17900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 286aa    MW: 31841.4 Da    PI: 7.1824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G180600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023112134123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Potri.003G180600.1 112 FSCNYCQRKFYSSQALGGHQNAH 134
                         89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-6108139No hitNo description
PROSITE profilePS5015711.427112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEPPARSEAC LSETSSLISV SNAPSCLRPS LIMESQKEGR KQLEEDQEAE EQEPREGGDT  60
NHDLVLDLSL SNKDSNQESS KPELNLIDSF DMNPSSKSLD APQSNETEPR VFSCNYCQRK  120
FYSSQALGGH QNAHKRERTL AKRGQRISEA SFSLLRPNYS HQNRYTSLAS LPLHGSFNRS  180
LGIQVHSMIN KPSNTSSSNI YGQNGWSRKP IDRQPEIGRL ESEKFLMGKN ISGSSSINGV  240
ARFESARRFS PVITEGIGGF WWEVGVNHLK AKQDDLQKLD LSLKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.66570.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G180600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304721.20.0zinc finger protein 1
TrEMBLB9GVJ10.0B9GVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-42C2H2 family protein