PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G170600.2
Common NamePOPTR_0003s16910g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 916aa    MW: 102104 Da    PI: 6.2299
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G170600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.61.3e-54181323116
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e ++rwlk+ e++ iL+n++k+++t+e+ ++p+sgsl+L+n++++r+fr+DG+sw+kkkdg+tv E+he+LKvg+ve+++cyYah+e+np
  Potri.003G170600.2  18 EEaQTRWLKPAEVLFILQNHDKYQFTKEPLQKPTSGSLFLFNKRILRFFRRDGHSWRKKKDGRTVGEAHERLKVGNVETINCYYAHGEQNP 108
                         55599************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhyle 116
                         +fqrr+yw+L+ ++e+ivlvhy+e
  Potri.003G170600.2 109 NFQRRSYWMLDPAFEHIVLVHYRE 132
                         **********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.42213139IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7516134IPR005559CG-1 DNA-binding domain
PfamPF038597.6E-4819132IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-9349438IPR013783Immunoglobulin-like fold
CDDcd001021.35E-5354438No hitNo description
PfamPF018338.9E-10354437IPR002909IPT domain
SuperFamilySSF812965.04E-19355438IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.201.4E-15550646IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.671552644IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-16554646IPR020683Ankyrin repeat-containing domain
CDDcd002041.99E-9572644No hitNo description
PfamPF127961.3E-7573645IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.381585617IPR002110Ankyrin repeat
SMARTSM002484.4E-4585614IPR002110Ankyrin repeat
SMARTSM002483800624653IPR002110Ankyrin repeat
SMARTSM0001518702724IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.584703732IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.3E-8705808IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24756778IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.95757786IPR000048IQ motif, EF-hand binding site
PfamPF006120.019759777IPR000048IQ motif, EF-hand binding site
SMARTSM000154.8E-5779801IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.956780804IPR000048IQ motif, EF-hand binding site
PfamPF006123.6E-5782801IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MGQGLTNPDR YDINSLFEEA QTRWLKPAEV LFILQNHDKY QFTKEPLQKP TSGSLFLFNK  60
RILRFFRRDG HSWRKKKDGR TVGEAHERLK VGNVETINCY YAHGEQNPNF QRRSYWMLDP  120
AFEHIVLVHY REISEGKPSP GSAAQLSPGF SYSPSSNTSQ TQGSSSAISG VYEQHQSLSS  180
PASVEVNSGL DIKDNGVDST AELTSFANNE VTQCLRRLEE QLSLNKDNIK EIGSFGGDEG  240
DTNDSKILEY VNHISKEDQS KNLLRGSQYI VDYQSYGGLS GKQLERNNLA PLQDAASLLP  300
PQEFEGFETP TYSSVIETHE NNADCYAMLY DQGHLGIPIE ADSNLTVAQQ QKFSIREISP  360
EWGYATEATK VIIVGSFLCD PSESSWTCMF GDTEVPLQII QEGVIRCEAP PHQPGKVTLC  420
ITSGNRESCS EIRDFDYRAK DSSCAHCNFS QTEATKSPEE LLLLVRFVQM LLSDFSLQRG  480
DNIETGIHLL QKLKADDDSW GYIIEALLVG SGTSSTTVDW LLQQLLKDKL RQWLSSKSQE  540
EHDHPGCSLS KKEQGIIHML AGLGFEWALS PILSHGVSIN FRDINGWTAL HWAARFGREK  600
MVAALLASGA SAGAVTDPSS KDPIGKTAAS IAASSGHKGL AGYLSEVALT SHLSSLKLKE  660
SELSKGSAEI EAERAVDSIS KESFAANEDQ VSLKDTLAAV RNAAQAAARI QSAFRAHSFR  720
KRQEIEASLL DEYGISAGDI QGLSAMSKLA FRNSQDINSA ALSIQKKYRG WKGRKDFLEL  780
RQKVVKIQAH VRGYRVRKNY KVICWAVGIL DKVVLRWRRK GIGLRGFRNE TESIDEREDD  840
DILKMFRKQK VDGTIDEAFS RVLSMVDSPD ARQQYRRMLQ RYRQAKDELG TSEAAASTSL  900
ADANEMENDD LYRFQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G170600.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453205.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K2B8F50.0A0A2K2B8F5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16910.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]